View conserved binding sites


Gene
VV07G00400
Description
name=GSVIVG01000149001;
Alias
GSVIVG01000149001;GSVIVT01000149001;GSVIVG01000149001
Binding siteNameDescriptionLocationPosition
Matrix_110ATABI4;AT3G57600Not availableUpstream-148
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-165
Matrix_146ORA47Not availableUpstream-145
Matrix_247PIF3Not availableUpstream-161
Matrix_268EMB2749;VND5;SMB;VND1;ANAC076;NAC101;ANAC105Not availableUpstream-150
Matrix_272DEAR4Not availableUpstream-145
Matrix_296GBF2Not availableUpstream-160
Matrix_300bZIP68;bZIP16Not availableUpstream-160
Matrix_345POC1Not availableUpstream-165
Matrix_388SNZ;SMZ;TOE2Not availableUpstream-196
Matrix_420ANAC58Not availableUpstream-151
Matrix_488ABF1Not availableUpstream-162
Matrix_501DAG2Not availableUpstream-189
Matrix_79FUS3Not availableUpstream-140
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-144
Motif_150RBCSCONSENSUSrbcS general consensus sequence; AATCCAA or AATCCAACIntron3340
Intron5566
Motif_155NODCON1GMOne of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodulesUpstream-213
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-171
Motif_459SORLIP1Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-156
Motif_48BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-147
Motif_552MRE1MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1Upstream-208
Upstream-165
Motif_585ATB2/AtbZIP53/AtbZIP44/GBF5 BS in ProDHPRE (Pro- or hypoosmolarity-responsive element) found in the promoter region of proline dehydrogenase (ProDH) gene in Arabidopsis; Core of 9-bp sequence ACTCATCCT which is necessary for the efficient expression of ProDH in response to L-Pro and hypoosmolarity; ATB2-binding site; Similar to GCN4 motif (ATGA(C/G)TCAT); ATB2 subgroup of bZIP transcription factors function as transcriptional activator for hypoosmolarity-inducible ProDH; A Novel Subgroup of bZIP Proteins Functions as Transctiptional Activators in Hypsosmolarity-Responsive Expression of the ProDH gene in ArabidopsisUpstream-110
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Upstream-623
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-185
Upstream-184
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-185
Motif_83CIACADIANLELHCRegion necessary for circadian expression of tomato Lhc geneUpstream-85