Matrix_101 | ERF5 | Not available | Upstream | -251 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -253 |
Matrix_148 | WRKY60 | Not available | Upstream | -1564 |
Matrix_173 | ZAP1 | Not available | Upstream | -1561 |
Matrix_190 | ATERF1 | Not available | Upstream | -250 |
| | | Upstream | -251 |
Matrix_224 | ERF1 | Not available | Upstream | -252 |
| | | Upstream | -349 |
| | | Upstream | -350 |
Matrix_272 | DEAR4 | Not available | Upstream | -251 |
Matrix_277 | RAP2.6 | Not available | Upstream | -349 |
| | | Upstream | -350 |
Matrix_287 | ERF2 | Not available | Upstream | -251 |
Matrix_288 | RAP2.3 | Not available | Upstream | -252 |
Matrix_295 | ERF1 | Not available | Upstream | -253 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -252 |
| | | Upstream | -349 |
| | | Upstream | -350 |
Matrix_329 | WRKY12 | Not available | Upstream | -1565 |
Matrix_334 | AT3G23230 | Not available | Upstream | -252 |
| | | Upstream | -349 |
| | | Upstream | -350 |
Matrix_343 | AT2G33710 | Not available | Upstream | -251 |
Matrix_360 | ORA59 | Not available | Upstream | -253 |
Matrix_363 | RAP2.3 | Not available | Upstream | -252 |
| | | Upstream | -349 |
| | | Upstream | -350 |
Matrix_406 | ATERF-7 | Not available | Upstream | -253 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -252 |
| | | Upstream | -349 |
| | | Upstream | -350 |
Matrix_45 | DRN | Not available | Upstream | -253 |
Matrix_458 | MGP;AT1G14580;AtIDD7;AtIDD5;AtIDD4;AtIDD12;JKD;AT5G66730 | Not available | Upstream | -297 |
Matrix_484 | ATERF13 | Not available | Upstream | -253 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -252 |
| | | Upstream | -349 |
| | | Upstream | -350 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -252 |
| | | Upstream | -349 |
| | | Upstream | -350 |
Matrix_83 | PRR5 | Not available | Upstream | -287 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -252 |
Motif_163 | BOXCPSAS1 | Box C in pea (P.s.) asparagine synthetase (AS1) gene; Found at -45; AS1 is negatively regulated by light; Box C binds with nuclear proteins, which was competed by a putative repressor element RE1 | Upstream | -181 |
Motif_195 | TATABOX4 | TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | Upstream | -782 |
| | | Upstream | -1223 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -293 |
| | | Upstream | -311 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -630 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -253 |
| | | Upstream | -351 |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -294 |
| | | Upstream | -312 |
| | | Upstream | -1607 |
Motif_320 | AGCBOXNPGLB | AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box | Upstream | -350 |
Motif_321 | TATABOX5 | TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis | Upstream | -1229 |
Motif_342 | POLASIG1 | PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis | Upstream | -1230 |
Motif_353 | HEXAMERATH4 | hexamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 gene | Upstream | -363 |
Motif_450 | E2FCONSENSUS | E2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plants | Upstream | -303 |
Motif_469 | QELEMENTZMZM13 | Q(quantitative)-element in maize ZM13 gene promoter; Found at -107 to -102; Involved in expression enhancing activity; ZM13 is a maize homolog of tomato LAT52 gene; ZM13 is a pollen-specific maize gene | Upstream | -330 |
Motif_49 | TATAPVTRNALEU | TATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP) | Upstream | -1223 |
Motif_591 | CBFHV | Binding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs) | Upstream | -361 |
Motif_603 | SITEIIATCYTC | Site II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and rice | Upstream | -302 |
Motif_630 | WBOXNTCHN48 | W box identified in the region between -125 and -69 of a tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and NtWRKY4 bound to W box; NtWRKYs possibly involved in elicitor-respsonsive transcription of defense genes in tobacco | Upstream | -331 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -278 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -167 |
| | | Upstream | -190 |