View conserved binding sites


Gene
ST02G031540
Description
tRNA-dihydrouridine synthase (AHRD V1 ***- D8S8E9_SELML); contains Interpro domain(s) IPR001269 tRNA-dihydrouridine synthase
Alias
gene:Sotub02g031540;Sotub02g031540.1.1;Sotub02g031540;Sotub02g031540.1.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-99
Matrix_110ATABI4;AT3G57600Not availableUpstream-101
Matrix_119RRTF1Not availableUpstream-103
Matrix_138RRTF1Not availableUpstream-103
Matrix_146ORA47Not availableUpstream-111
Matrix_147ERF3;AT1G80580Not availableUpstream-99
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-110
Matrix_190ATERF1Not availableUpstream-101
Matrix_206CUC1;ANAC100Not availableUpstream-88
Matrix_224ERF1Not availableUpstream-100
Matrix_234RAP2.3Not availableUpstream-102
Upstream-99
Matrix_243RAP2.12;RAP2.2Not availableUpstream-110
Matrix_252RAP2.6Not availableUpstream-102
Upstream-99
Matrix_256IXR11;KNAT5;KNAT4;KNAT3Not availableUpstream-200
Matrix_261ATERF-1Not availableUpstream-99
Matrix_272DEAR4Not availableUpstream-99
Matrix_277RAP2.6Not availableUpstream-103
Matrix_287ERF2Not availableUpstream-99
Matrix_288RAP2.3Not availableUpstream-112
Matrix_295ERF1Not availableUpstream-99
Matrix_321HRDNot availableUpstream-99
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-103
Upstream-100
Matrix_334AT3G23230Not availableUpstream-98
Matrix_343AT2G33710Not availableUpstream-102
Upstream-99
Matrix_344ATERF15;AT4G18450Not availableUpstream-99
Matrix_355ERF10;ERF11Not availableUpstream-103
Upstream-100
Matrix_360ORA59Not availableUpstream-99
Matrix_363RAP2.3Not availableUpstream-103
Upstream-100
Matrix_374AT5G07580;AT5G61590Not availableUpstream-100
Upstream-99
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-99
Matrix_378ATERF1Not availableUpstream-102
Upstream-99
Matrix_38SPL14Not availableUpstream-78
Matrix_406ATERF-7Not availableUpstream-104
Upstream-101
Matrix_409DEAR3Not availableUpstream-100
Matrix_41anac058Not availableUpstream-88
Matrix_418KNAT6;KNAT2Not availableUpstream-200
Matrix_420ANAC58Not availableUpstream-87
Matrix_426CRF1;CRF2Not availableUpstream-101
Upstream-98
Matrix_45DRNNot availableUpstream-99
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-100
Matrix_462ATERF-8Not availableUpstream-104
Upstream-101
Matrix_469NAC041;NAC083Not availableUpstream-88
Matrix_47AtMYB77Not availableUpstream-82
Matrix_473RRTF1Not availableUpstream-102
Upstream-99
Matrix_484ATERF13Not availableUpstream-99
Matrix_490AtMYB77;ATMYB44Not availableUpstream-107
Matrix_493AT1G22985;AT1G71130Not availableUpstream-102
Upstream-99
Matrix_50ATERF14;AT5G43410Not availableUpstream-100
Matrix_506DRNL;ATERF-4Not availableUpstream-101
Upstream-98
Matrix_517ERF12Not availableUpstream-99
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-103
Upstream-100
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-98
Matrix_91CRF3Not availableUpstream-102
Upstream-99
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-72
Motif_193GLK1GLK transcription factors coordinate expression of the photosynthetic apparatus in ArabidopsisUpstream-92
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-105
Upstream-72
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-98
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-72
Motif_371DRE-like promoter motifThe Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental StressesUpstream-57
Motif_391REALPHALGLHCB21REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulationUpstream-90
Motif_392PALBOXAPCBox A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box LUpstream-78