View conserved binding sites


Gene
SL03G044270
Description
tRNA-dihydrouridine synthase 1-like protein (AHRD V1 **** D3BAF6_POLPA)%3B contains Interpro domain(s) IPR001269 tRNA-dihydrouridine synthase
Alias
Solyc03g044270.2;Solyc03g044270.2;Solyc03g044270.2.1;Solyc03g044270.2.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-112
Upstream-113
Matrix_119RRTF1Not availableUpstream-113
Upstream-114
Matrix_138RRTF1Not availableUpstream-113
Upstream-114
Matrix_146ORA47Not availableUpstream-112
Upstream-113
Matrix_147ERF3;AT1G80580Not availableUpstream-114
Upstream-115
Matrix_166TGA4Not availableUpstream-55
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableUpstream-106
Matrix_224ERF1Not availableUpstream-113
Upstream-114
Matrix_234RAP2.3Not availableUpstream-112
Upstream-113
Matrix_243RAP2.12;RAP2.2Not availableUpstream-113
Upstream-114
Matrix_252RAP2.6Not availableUpstream-112
Upstream-113
Matrix_261ATERF-1Not availableUpstream-113
Upstream-114
Matrix_268EMB2749;VND5;SMB;VND1;ANAC076;NAC101;ANAC105Not availableUpstream-99
Matrix_272DEAR4Not availableUpstream-112
Upstream-113
Matrix_278AtbZIP44Not availableUpstream-99
Matrix_287ERF2Not availableUpstream-112
Upstream-113
Matrix_288RAP2.3Not availableUpstream-113
Upstream-114
Matrix_295ERF1Not availableUpstream-114
Upstream-115
Matrix_321HRDNot availableUpstream-113
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-113
Upstream-114
Matrix_334AT3G23230Not availableUpstream-113
Upstream-114
Matrix_343AT2G33710Not availableUpstream-112
Upstream-113
Upstream-115
Upstream-116
Matrix_344ATERF15;AT4G18450Not availableUpstream-114
Upstream-115
Matrix_355ERF10;ERF11Not availableUpstream-113
Upstream-114
Matrix_360ORA59Not availableUpstream-114
Upstream-115
Matrix_363RAP2.3Not availableUpstream-113
Upstream-114
Matrix_374AT5G07580;AT5G61590Not availableUpstream-113
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-113
Upstream-114
Matrix_378ATERF1Not availableUpstream-112
Upstream-113
Matrix_401MYB55Not availableUpstream-106
Matrix_406ATERF-7Not availableUpstream-114
Upstream-115
Matrix_409DEAR3Not availableUpstream-113
Upstream-114
Matrix_426CRF1;CRF2Not availableUpstream-113
Upstream-114
Matrix_45DRNNot availableUpstream-114
Upstream-115
Matrix_462ATERF-8Not availableUpstream-114
Upstream-115
Matrix_473RRTF1Not availableUpstream-112
Upstream-113
Matrix_484ATERF13Not availableUpstream-114
Upstream-115
Matrix_493AT1G22985;AT1G71130Not availableUpstream-113
Upstream-114
Matrix_496ATMYB15Not availableUpstream-106
Matrix_5AT5G51190;ERF104Not availableUpstream-114
Matrix_50ATERF14;AT5G43410Not availableUpstream-113
Upstream-114
Matrix_506DRNL;ATERF-4Not availableUpstream-113
Upstream-114
Matrix_510AtMYB84More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaUpstream-106
Matrix_517ERF12Not availableUpstream-114
Upstream-115
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-113
Upstream-114
Upstream-188
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-113
Upstream-114
Matrix_91CRF3Not availableUpstream-113
Upstream-114
Motif_178MRNA3ENDTAH3Cis element in 3' end region of wheat histone H3 mRNA; 3' end formation; Also found in histone genes of other plants, yeastUpstream-90
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-115
Motif_495TRANSINITMONOCOTSContext sequence of translational initiation codon in monocotsUpstream-94
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-93