Matrix_101 | ERF5 | Not available | Upstream | -221 |
Matrix_109 | GBF3 | Not available | Upstream | -289 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -224 |
| | | Upstream | -222 |
Matrix_113 | ABI5 | Not available | Upstream | -289 |
Matrix_119 | RRTF1 | Not available | Upstream | -220 |
Matrix_120 | BEE2 | Not available | Upstream | -290 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -290 |
Matrix_129 | ABF1 | Not available | Upstream | -290 |
Matrix_133 | DYT1 | Not available | Upstream | -289 |
Matrix_134 | ABF1 | Not available | Upstream | -289 |
Matrix_138 | RRTF1 | Not available | Upstream | -220 |
Matrix_14 | ZCW32;AT5G62610 | Not available | Upstream | -290 |
| | | Upstream | -289 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -289 |
Matrix_146 | ORA47 | Not available | Upstream | -221 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -222 |
| | | Upstream | -219 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Downstream | 1356 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -220 |
Matrix_156 | POC1 | Not available | Upstream | -289 |
Matrix_158 | AT1G03040;LRL1;UNE12;LRL2;LRL3 | Not available | Upstream | -290 |
Matrix_173 | ZAP1 | Not available | Upstream | -221 |
Matrix_176 | MYB98 | Not available | Upstream | -207 |
Matrix_19 | PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling | Upstream | -290 |
Matrix_190 | ATERF1 | Not available | Upstream | -222 |
| | | Upstream | -221 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -289 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Upstream | -290 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -289 |
Matrix_233 | MYC3 | Not available | Upstream | -289 |
Matrix_234 | RAP2.3 | Not available | Upstream | -222 |
| | | Upstream | -221 |
Matrix_247 | PIF3 | Not available | Upstream | -290 |
Matrix_25 | AP3 | Not available | Downstream | 1464 |
Matrix_252 | RAP2.6 | Not available | Upstream | -222 |
| | | Upstream | -221 |
Matrix_259 | AT1G50680;AT1G51120 | Not available | Upstream | -290 |
Matrix_261 | ATERF-1 | Not available | Upstream | -220 |
Matrix_264 | ATAREB1 | Not available | Upstream | -290 |
Matrix_272 | DEAR4 | Not available | Upstream | -221 |
Matrix_287 | ERF2 | Not available | Upstream | -221 |
Matrix_288 | RAP2.3 | Not available | Upstream | -220 |
Matrix_290 | AP2 | Not available | Upstream | -172 |
Matrix_296 | GBF2 | Not available | Upstream | -290 |
| | | Upstream | -289 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -290 |
| | | Upstream | -289 |
Matrix_301 | PIL5 | Not available | Upstream | -289 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -220 |
Matrix_330 | MYC2;TT8 | Not available | Upstream | -290 |
Matrix_331 | GBF1 | Not available | Upstream | -289 |
Matrix_332 | SPT;ALC | Not available | Upstream | -290 |
| | | Upstream | -289 |
Matrix_34 | RAV1_2 | RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants | Downstream | 1360 |
Matrix_343 | AT2G33710 | Not available | Upstream | -221 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -220 |
Matrix_363 | RAP2.3 | Not available | Upstream | -220 |
Matrix_378 | ATERF1 | Not available | Upstream | -221 |
Matrix_389 | ILR3 | Not available | Upstream | -290 |
Matrix_449 | BIM2 | Not available | Upstream | -290 |
Matrix_45 | DRN | Not available | Upstream | -222 |
| | | Upstream | -219 |
Matrix_465 | MYC4 | Not available | Upstream | -290 |
Matrix_467 | RAV1 | Not available | Downstream | 1360 |
Matrix_473 | RRTF1 | Not available | Upstream | -222 |
| | | Upstream | -221 |
Matrix_477 | RAV1 | Not available | Downstream | 1360 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -220 |
Matrix_507 | TCP3 | Not available | Upstream | -172 |
Matrix_517 | ERF12 | Not available | Upstream | -222 |
Matrix_53 | MYC3 | Not available | Upstream | -288 |
Matrix_64 | PIF5 | Not available | Upstream | -289 |
Matrix_7 | PIF4 | Not available | Upstream | -290 |
| | | Upstream | -288 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -220 |
Matrix_91 | CRF3 | Not available | Upstream | -220 |
Motif_141 | BP5OSWX | OsBP-5 (a MYC protein) binding site in Wx promoter | Upstream | -1539 |
Motif_174 | SREATMSD | sugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in Arabidopsis | Upstream | -663 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -288 |
Motif_182 | MYB2CONSENSUSAT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22 | Upstream | -225 |
| | | Upstream | -205 |
| | | Upstream | -181 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -288 |
Motif_200 | GBOXLERBCS | G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF | Upstream | -289 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -289 |
| | | Upstream | -288 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Upstream | -225 |
| | | Upstream | -205 |
| | | Upstream | -185 |
| | | Upstream | -181 |
Motif_235 | C8GCARGAT | Binding site of plant MADS-domain protein AGL15; CArG motif with a longer A/T-rich core;A variant of CArG motif, with a longer A/T-rich core; Binding site for AGL15 (AGAMOUS-like 15) | Upstream | -481 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -288 |
Motif_254 | MYB46;MYB83 | MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes | Upstream | -452 |
Motif_279 | POLASIG3 | Plant polyA signal; Consensus sequence for plant polyadenylation signal | Upstream | -478 |
Motif_291 | ABFs binding site motif | Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element | Upstream | -288 |
Motif_297 | Bellringer/replumless/pennywise BS1 IN AG | Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems | Upstream | -1550 |
| | | Upstream | -154 |
Motif_321 | TATABOX5 | TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis | Upstream | -479 |
Motif_336 | MYBMOUSE | Binding site for mouse c-myb protein | Upstream | -225 |
| | | Upstream | -205 |
| | | Upstream | -181 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -288 |
Motif_353 | HEXAMERATH4 | hexamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 gene | Upstream | -191 |
Motif_400 | ABREAZMRAB28 | ABA-responsive element (ABRE A) found at -148 to -139 in maize rab28; Maize rab28 is ABA-inducible in embryos and vegetative tissues | Upstream | -290 |
Motif_419 | MYB4 binding site motif | Not available | Upstream | -452 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -289 |
| | | Upstream | -288 |
Motif_459 | SORLIP1 | Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Upstream | -285 |
Motif_473 | ABREOSRGA1 | ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxia | Upstream | -289 |
Motif_502 | MYB98 | The MYB98 subcircuit of the synergid gene regulatory network includes genes directly and indirectly regulated by MYB98 | Downstream | 1712 |
Motif_503 | EECCRCAH1 | EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1 | Upstream | -197 |
Motif_51 | MYB46 | Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesis | Upstream | -453 |
Motif_536 | TBOXATGAPB | Tbox found in the Arabidopsis thaliana GAPB gene promoter; Located between -94 and -89 (T1) and also between -84 and -79 (T2); Mutations in the Tbox resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana | Downstream | 1688 |
Motif_552 | MRE1 | MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1 | Downstream | 1693 |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -287 |
Motif_567 | T/GBOXATPIN2 | T/G-box found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognize this motif | Upstream | -1538 |
Motif_570 | POLASIG2 | PolyA signal; poly A signal found in rice alpha-amylase; -10 to -30 in the case of animal genes | Upstream | -1549 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -287 |
Motif_638 | ABRE binding site motif | Not available | Upstream | -288 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -196 |
Motif_666 | MYB binding site promoter | A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes | Upstream | -453 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Downstream | 1634 |
| | | Downstream | 1636 |
| | | Downstream | 1638 |
| | | Downstream | 1640 |
Motif_83 | CIACADIANLELHC | Region necessary for circadian expression of tomato Lhc gene | Upstream | -114 |