View conserved binding sites


Gene
PT05G13750
Description
Cyclin-dependent kinase inhibitor 6
Alias
Potri.005G137500;PAC:27030295;Potri.005G137500.1;Potri.005G137500.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-221
Matrix_109GBF3Not availableUpstream-289
Matrix_110ATABI4;AT3G57600Not availableUpstream-224
Upstream-222
Matrix_113ABI5Not availableUpstream-289
Matrix_119RRTF1Not availableUpstream-220
Matrix_120BEE2Not availableUpstream-290
Matrix_122ABF1;AREB2Not availableUpstream-290
Matrix_129ABF1Not availableUpstream-290
Matrix_133DYT1Not availableUpstream-289
Matrix_134ABF1Not availableUpstream-289
Matrix_138RRTF1Not availableUpstream-220
Matrix_14ZCW32;AT5G62610Not availableUpstream-290
Upstream-289
Matrix_145GBF4;AT5G44080Not availableUpstream-289
Matrix_146ORA47Not availableUpstream-221
Matrix_147ERF3;AT1G80580Not availableUpstream-222
Upstream-219
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorDownstream1356
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-220
Matrix_156POC1Not availableUpstream-289
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-290
Matrix_173ZAP1Not availableUpstream-221
Matrix_176MYB98Not availableUpstream-207
Matrix_19PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signalingUpstream-290
Matrix_190ATERF1Not availableUpstream-222
Upstream-221
Matrix_192FHY3/FAR1Not availableUpstream-289
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-290
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-289
Matrix_233MYC3Not availableUpstream-289
Matrix_234RAP2.3Not availableUpstream-222
Upstream-221
Matrix_247PIF3Not availableUpstream-290
Matrix_25AP3Not availableDownstream1464
Matrix_252RAP2.6Not availableUpstream-222
Upstream-221
Matrix_259AT1G50680;AT1G51120Not availableUpstream-290
Matrix_261ATERF-1Not availableUpstream-220
Matrix_264ATAREB1Not availableUpstream-290
Matrix_272DEAR4Not availableUpstream-221
Matrix_287ERF2Not availableUpstream-221
Matrix_288RAP2.3Not availableUpstream-220
Matrix_290AP2Not availableUpstream-172
Matrix_296GBF2Not availableUpstream-290
Upstream-289
Matrix_300bZIP68;bZIP16Not availableUpstream-290
Upstream-289
Matrix_301PIL5Not availableUpstream-289
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-220
Matrix_330MYC2;TT8Not availableUpstream-290
Matrix_331GBF1Not availableUpstream-289
Matrix_332SPT;ALCNot availableUpstream-290
Upstream-289
Matrix_34RAV1_2RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plantsDownstream1360
Matrix_343AT2G33710Not availableUpstream-221
Matrix_355ERF10;ERF11Not availableUpstream-220
Matrix_363RAP2.3Not availableUpstream-220
Matrix_378ATERF1Not availableUpstream-221
Matrix_389ILR3Not availableUpstream-290
Matrix_449BIM2Not availableUpstream-290
Matrix_45DRNNot availableUpstream-222
Upstream-219
Matrix_465MYC4Not availableUpstream-290
Matrix_467RAV1Not availableDownstream1360
Matrix_473RRTF1Not availableUpstream-222
Upstream-221
Matrix_477RAV1Not availableDownstream1360
Matrix_493AT1G22985;AT1G71130Not availableUpstream-220
Matrix_507TCP3Not availableUpstream-172
Matrix_517ERF12Not availableUpstream-222
Matrix_53MYC3Not availableUpstream-288
Matrix_64PIF5Not availableUpstream-289
Matrix_7PIF4Not availableUpstream-290
Upstream-288
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-220
Matrix_91CRF3Not availableUpstream-220
Motif_141BP5OSWXOsBP-5 (a MYC protein) binding site in Wx promoterUpstream-1539
Motif_174SREATMSDsugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in ArabidopsisUpstream-663
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-288
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-225
Upstream-205
Upstream-181
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-288
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFUpstream-289
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-289
Upstream-288
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-225
Upstream-205
Upstream-185
Upstream-181
Motif_235C8GCARGATBinding site of plant MADS-domain protein AGL15; CArG motif with a longer A/T-rich core;A variant of CArG motif, with a longer A/T-rich core; Binding site for AGL15 (AGAMOUS-like 15)Upstream-481
Motif_244ABRE-like binding site motifNot availableUpstream-288
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesUpstream-452
Motif_279POLASIG3Plant polyA signal; Consensus sequence for plant polyadenylation signalUpstream-478
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-288
Motif_297Bellringer/replumless/pennywise BS1 IN AGRepression of AGAMOUS by BELLRINGER in Floral and Inflorescence MeristemsUpstream-1550
Upstream-154
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisUpstream-479
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-225
Upstream-205
Upstream-181
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-288
Motif_353HEXAMERATH4hexamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 geneUpstream-191
Motif_400ABREAZMRAB28ABA-responsive element (ABRE A) found at -148 to -139 in maize rab28; Maize rab28 is ABA-inducible in embryos and vegetative tissuesUpstream-290
Motif_419MYB4 binding site motifNot availableUpstream-452
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-289
Upstream-288
Motif_459SORLIP1Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-285
Motif_473ABREOSRGA1ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxiaUpstream-289
Motif_502MYB98The MYB98 subcircuit of the synergid gene regulatory network includes genes directly and indirectly regulated by MYB98Downstream1712
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Upstream-197
Motif_51MYB46Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesisUpstream-453
Motif_536TBOXATGAPBTbox found in the Arabidopsis thaliana GAPB gene promoter; Located between -94 and -89 (T1) and also between -84 and -79 (T2); Mutations in the Tbox resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thalianaDownstream1688
Motif_552MRE1MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1Downstream1693
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-287
Motif_567T/GBOXATPIN2T/G-box found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognize this motifUpstream-1538
Motif_570POLASIG2PolyA signal; poly A signal found in rice alpha-amylase; -10 to -30 in the case of animal genesUpstream-1549
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-287
Motif_638ABRE binding site motifNot availableUpstream-288
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-196
Motif_666MYB binding site promoterA flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genesUpstream-453
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGADownstream1634
Downstream1636
Downstream1638
Downstream1640
Motif_83CIACADIANLELHCRegion necessary for circadian expression of tomato Lhc geneUpstream-114