View conserved binding sites


Gene
PT02G02350
Description
Putative HVA22-like protein g
Alias
Potri.002G023500.1;Potri.002G023500;Potri.002G023500.1;PAC:27020757
Binding siteNameDescriptionLocationPosition
Matrix_1TOE2Not availableUpstream-616
Matrix_101ERF5Not availableUpstream-589
Upstream-590
Upstream-591
Upstream-623
Upstream-624
Matrix_110ATABI4;AT3G57600Not availableUpstream-589
Upstream-590
Upstream-591
Matrix_119RRTF1Not availableUpstream-591
Upstream-592
Matrix_138RRTF1Not availableUpstream-591
Upstream-592
Matrix_146ORA47Not availableUpstream-589
Upstream-590
Upstream-591
Matrix_147ERF3;AT1G80580Not availableUpstream-589
Upstream-590
Upstream-592
Upstream-593
Matrix_154AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130Not availableDownstream1648
Upstream-621
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-591
Upstream-592
Matrix_190ATERF1Not availableUpstream-589
Upstream-590
Upstream-591
Matrix_224ERF1Not availableUpstream-591
Upstream-592
Matrix_234RAP2.3Not availableUpstream-589
Upstream-590
Upstream-591
Matrix_243RAP2.12;RAP2.2Not availableUpstream-591
Upstream-592
Matrix_252RAP2.6Not availableUpstream-589
Upstream-590
Upstream-591
Upstream-626
Upstream-627
Matrix_261ATERF-1Not availableUpstream-591
Upstream-592
Upstream-623
Upstream-624
Matrix_272DEAR4Not availableUpstream-589
Upstream-590
Upstream-591
Matrix_280TCP24;TCP1;BRC2;ATTCP18Not availableUpstream-589
Matrix_285DDF1Not availableUpstream-621
Upstream-622
Matrix_287ERF2Not availableUpstream-589
Upstream-590
Upstream-591
Matrix_288RAP2.3Not availableUpstream-591
Upstream-592
Matrix_295ERF1Not availableUpstream-592
Upstream-593
Matrix_321HRDNot availableUpstream-591
Upstream-592
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-591
Upstream-592
Matrix_334AT3G23230Not availableUpstream-591
Upstream-592
Matrix_343AT2G33710Not availableUpstream-590
Upstream-591
Matrix_344ATERF15;AT4G18450Not availableUpstream-592
Upstream-593
Matrix_355ERF10;ERF11Not availableUpstream-591
Upstream-592
Matrix_360ORA59Not availableUpstream-592
Upstream-593
Matrix_363RAP2.3Not availableUpstream-591
Upstream-592
Matrix_374AT5G07580;AT5G61590Not availableUpstream-589
Upstream-590
Upstream-591
Upstream-592
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-591
Upstream-592
Matrix_378ATERF1Not availableUpstream-589
Upstream-590
Upstream-591
Matrix_387ORA47Not availableDownstream1648
Upstream-621
Matrix_395AT1G19210;ORA47;AT4G31060;AT5G21960Not availableDownstream1648
Upstream-622
Matrix_406ATERF-7Not availableUpstream-592
Upstream-593
Matrix_409DEAR3Not availableUpstream-588
Upstream-589
Upstream-591
Upstream-592
Upstream-622
Upstream-623
Matrix_422TOE1Not availableUpstream-616
Matrix_426CRF1;CRF2Not availableUpstream-591
Upstream-592
Matrix_448ATERF6Not availableUpstream-591
Matrix_45DRNNot availableUpstream-589
Upstream-590
Upstream-592
Upstream-593
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-591
Upstream-592
Matrix_462ATERF-8Not availableUpstream-592
Upstream-593
Matrix_473RRTF1Not availableUpstream-589
Upstream-590
Upstream-591
Matrix_478AT1G01250Not availableUpstream-623
Matrix_484ATERF13Not availableUpstream-592
Upstream-593
Matrix_493AT1G22985;AT1G71130Not availableUpstream-591
Upstream-592
Matrix_50ATERF14;AT5G43410Not availableUpstream-591
Upstream-592
Matrix_506DRNL;ATERF-4Not availableUpstream-591
Upstream-592
Matrix_515ddf2;ATCBF3;CBF1;CBF4Not availableUpstream-621
Upstream-622
Matrix_517ERF12Not availableUpstream-589
Upstream-590
Upstream-592
Upstream-593
Upstream-626
Upstream-627
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-588
Upstream-589
Upstream-591
Upstream-592
Matrix_73DEAR3;RAP2.9;RAP2.10Not availableUpstream-623
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-590
Upstream-591
Upstream-592
Matrix_91CRF3Not availableUpstream-591
Upstream-592
Motif_189CMSRE1IBSPOACMSRE-1 (Carbohydrate Metabolite Signal Responsive Element 1) found in the promoter of sweet potato sporamin A geneDownstream1646
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Downstream1732
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-605
Upstream-612
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesDownstream1640
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-674
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-593
Motif_371DRE-like promoter motifThe Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental StressesUpstream-623
Motif_392PALBOXAPCBox A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box LDownstream1646
Motif_454DRECRTCOREATCore motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)Upstream-624
Motif_51MYB46Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesisDownstream1641
Motif_591CBFHVBinding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs)Upstream-624
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementDownstream1734
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-635
Motif_667TATABOXOSPALBinding site for OsTBP2, found in the promoter of rice pal gene encoding phenylalanine ammonia-lyase; OsTFIIB stimulated the DNA binding and bending activities of OsTBP2 and synergistically enhanced OsTBP2-mediated transcription from the pal promoterDownstream1631
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementDownstream1734
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-668