Matrix_1 | TOE2 | Not available | Upstream | -616 |
Matrix_101 | ERF5 | Not available | Upstream | -589 |
| | | Upstream | -590 |
| | | Upstream | -591 |
| | | Upstream | -623 |
| | | Upstream | -624 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -589 |
| | | Upstream | -590 |
| | | Upstream | -591 |
Matrix_119 | RRTF1 | Not available | Upstream | -591 |
| | | Upstream | -592 |
Matrix_138 | RRTF1 | Not available | Upstream | -591 |
| | | Upstream | -592 |
Matrix_146 | ORA47 | Not available | Upstream | -589 |
| | | Upstream | -590 |
| | | Upstream | -591 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -589 |
| | | Upstream | -590 |
| | | Upstream | -592 |
| | | Upstream | -593 |
Matrix_154 | AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130 | Not available | Downstream | 1648 |
| | | Upstream | -621 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -591 |
| | | Upstream | -592 |
Matrix_190 | ATERF1 | Not available | Upstream | -589 |
| | | Upstream | -590 |
| | | Upstream | -591 |
Matrix_224 | ERF1 | Not available | Upstream | -591 |
| | | Upstream | -592 |
Matrix_234 | RAP2.3 | Not available | Upstream | -589 |
| | | Upstream | -590 |
| | | Upstream | -591 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -591 |
| | | Upstream | -592 |
Matrix_252 | RAP2.6 | Not available | Upstream | -589 |
| | | Upstream | -590 |
| | | Upstream | -591 |
| | | Upstream | -626 |
| | | Upstream | -627 |
Matrix_261 | ATERF-1 | Not available | Upstream | -591 |
| | | Upstream | -592 |
| | | Upstream | -623 |
| | | Upstream | -624 |
Matrix_272 | DEAR4 | Not available | Upstream | -589 |
| | | Upstream | -590 |
| | | Upstream | -591 |
Matrix_280 | TCP24;TCP1;BRC2;ATTCP18 | Not available | Upstream | -589 |
Matrix_285 | DDF1 | Not available | Upstream | -621 |
| | | Upstream | -622 |
Matrix_287 | ERF2 | Not available | Upstream | -589 |
| | | Upstream | -590 |
| | | Upstream | -591 |
Matrix_288 | RAP2.3 | Not available | Upstream | -591 |
| | | Upstream | -592 |
Matrix_295 | ERF1 | Not available | Upstream | -592 |
| | | Upstream | -593 |
Matrix_321 | HRD | Not available | Upstream | -591 |
| | | Upstream | -592 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -591 |
| | | Upstream | -592 |
Matrix_334 | AT3G23230 | Not available | Upstream | -591 |
| | | Upstream | -592 |
Matrix_343 | AT2G33710 | Not available | Upstream | -590 |
| | | Upstream | -591 |
Matrix_344 | ATERF15;AT4G18450 | Not available | Upstream | -592 |
| | | Upstream | -593 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -591 |
| | | Upstream | -592 |
Matrix_360 | ORA59 | Not available | Upstream | -592 |
| | | Upstream | -593 |
Matrix_363 | RAP2.3 | Not available | Upstream | -591 |
| | | Upstream | -592 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -589 |
| | | Upstream | -590 |
| | | Upstream | -591 |
| | | Upstream | -592 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -591 |
| | | Upstream | -592 |
Matrix_378 | ATERF1 | Not available | Upstream | -589 |
| | | Upstream | -590 |
| | | Upstream | -591 |
Matrix_387 | ORA47 | Not available | Downstream | 1648 |
| | | Upstream | -621 |
Matrix_395 | AT1G19210;ORA47;AT4G31060;AT5G21960 | Not available | Downstream | 1648 |
| | | Upstream | -622 |
Matrix_406 | ATERF-7 | Not available | Upstream | -592 |
| | | Upstream | -593 |
Matrix_409 | DEAR3 | Not available | Upstream | -588 |
| | | Upstream | -589 |
| | | Upstream | -591 |
| | | Upstream | -592 |
| | | Upstream | -622 |
| | | Upstream | -623 |
Matrix_422 | TOE1 | Not available | Upstream | -616 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -591 |
| | | Upstream | -592 |
Matrix_448 | ATERF6 | Not available | Upstream | -591 |
Matrix_45 | DRN | Not available | Upstream | -589 |
| | | Upstream | -590 |
| | | Upstream | -592 |
| | | Upstream | -593 |
Matrix_454 | AT1G77200;ATERF38;AT4G16750;AT5G52020 | Not available | Upstream | -591 |
| | | Upstream | -592 |
Matrix_462 | ATERF-8 | Not available | Upstream | -592 |
| | | Upstream | -593 |
Matrix_473 | RRTF1 | Not available | Upstream | -589 |
| | | Upstream | -590 |
| | | Upstream | -591 |
Matrix_478 | AT1G01250 | Not available | Upstream | -623 |
Matrix_484 | ATERF13 | Not available | Upstream | -592 |
| | | Upstream | -593 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -591 |
| | | Upstream | -592 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -591 |
| | | Upstream | -592 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -591 |
| | | Upstream | -592 |
Matrix_515 | ddf2;ATCBF3;CBF1;CBF4 | Not available | Upstream | -621 |
| | | Upstream | -622 |
Matrix_517 | ERF12 | Not available | Upstream | -589 |
| | | Upstream | -590 |
| | | Upstream | -592 |
| | | Upstream | -593 |
| | | Upstream | -626 |
| | | Upstream | -627 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -588 |
| | | Upstream | -589 |
| | | Upstream | -591 |
| | | Upstream | -592 |
Matrix_73 | DEAR3;RAP2.9;RAP2.10 | Not available | Upstream | -623 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -590 |
| | | Upstream | -591 |
| | | Upstream | -592 |
Matrix_91 | CRF3 | Not available | Upstream | -591 |
| | | Upstream | -592 |
Motif_189 | CMSRE1IBSPOA | CMSRE-1 (Carbohydrate Metabolite Signal Responsive Element 1) found in the promoter of sweet potato sporamin A gene | Downstream | 1646 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Downstream | 1732 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Upstream | -605 |
| | | Upstream | -612 |
Motif_254 | MYB46;MYB83 | MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes | Downstream | 1640 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Upstream | -674 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -593 |
Motif_371 | DRE-like promoter motif | The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses | Upstream | -623 |
Motif_392 | PALBOXAPC | Box A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box L | Downstream | 1646 |
Motif_454 | DRECRTCOREAT | Core motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower) | Upstream | -624 |
Motif_51 | MYB46 | Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesis | Downstream | 1641 |
Motif_591 | CBFHV | Binding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs) | Upstream | -624 |
Motif_609 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Downstream | 1734 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -635 |
Motif_667 | TATABOXOSPAL | Binding site for OsTBP2, found in the promoter of rice pal gene encoding phenylalanine ammonia-lyase; OsTFIIB stimulated the DNA binding and bending activities of OsTBP2 and synergistically enhanced OsTBP2-mediated transcription from the pal promoter | Downstream | 1631 |
Motif_672 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Downstream | 1734 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -668 |