Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -189 |
| | | Upstream | -190 |
| | | Upstream | -212 |
Matrix_113 | ABI5 | Not available | Upstream | -191 |
| | | Upstream | -192 |
| | | Upstream | -212 |
Matrix_129 | ABF1 | Not available | Upstream | -190 |
| | | Upstream | -191 |
Matrix_14 | ZCW32;AT5G62610 | Not available | Upstream | -191 |
| | | Upstream | -192 |
Matrix_150 | UNE10;PIF7 | Not available | Upstream | -191 |
| | | Upstream | -192 |
| | | Upstream | -214 |
Matrix_156 | POC1 | Not available | Upstream | -191 |
| | | Upstream | -192 |
| | | Upstream | -214 |
Matrix_158 | AT1G03040;LRL1;UNE12;LRL2;LRL3 | Not available | Upstream | -190 |
| | | Upstream | -191 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -191 |
| | | Upstream | -192 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Upstream | -190 |
| | | Upstream | -191 |
| | | Upstream | -213 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -191 |
| | | Upstream | -192 |
Matrix_296 | GBF2 | Not available | Upstream | -191 |
| | | Upstream | -192 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -191 |
| | | Upstream | -192 |
Matrix_301 | PIL5 | Not available | Upstream | -208 |
Matrix_332 | SPT;ALC | Not available | Upstream | -191 |
| | | Upstream | -192 |
| | | Upstream | -214 |
Matrix_338 | AP2 | Not available | Upstream | -187 |
| | | Upstream | -188 |
Matrix_356 | PRR5 | Not available | Upstream | -183 |
| | | Upstream | -184 |
Matrix_365 | AT1G10120;AT1G25330;CIB5;AT1G68920;AT3G23690;CIB1 | Not available | Upstream | -191 |
| | | Upstream | -192 |
Matrix_369 | AT2G18300 | Not available | Upstream | -188 |
| | | Upstream | -189 |
Matrix_389 | ILR3 | Not available | Upstream | -190 |
| | | Upstream | -191 |
Matrix_476 | bHLH115;bHLH34 | Not available | Upstream | -191 |
| | | Upstream | -192 |
Matrix_480 | BES1 | Not available | Upstream | -190 |
| | | Upstream | -191 |
Matrix_488 | ABF1 | Not available | Upstream | -189 |
| | | Upstream | -190 |
Matrix_53 | MYC3 | Not available | Upstream | -215 |
Matrix_55 | PIF3 | Not available | Upstream | -212 |
Matrix_60 | AT1G01260;AT5G57150 | Not available | Upstream | -191 |
| | | Upstream | -192 |
Matrix_64 | PIF5 | Not available | Upstream | -214 |
Matrix_7 | PIF4 | Not available | Upstream | -192 |
| | | Upstream | -193 |
Matrix_77 | PRR5 | Not available | Upstream | -188 |
| | | Upstream | -189 |
Matrix_80 | BIM1 | Not available | Upstream | -212 |
Motif_122 | TGTCACACMCUCUMISIN | TGTCACA motif found in the region (from -254 to -215) of cucumisin (a subtilisin-like serine protease) in the fruit of melon; A novel enhancer element necessary for fruit-specific expression of the cucumisin gene | Upstream | -180 |
Motif_125 | BOXIINTPATPB | Box II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoter | Upstream | -255 |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Upstream | -191 |
| | | Upstream | -213 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -192 |
| | | Upstream | -214 |
Motif_182 | MYB2CONSENSUSAT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22 | Upstream | -264 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -151 |
| | | Upstream | -192 |
| | | Upstream | -248 |
| | | Upstream | -264 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -191 |
| | | Upstream | -192 |
| | | Upstream | -214 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Upstream | -264 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -192 |
Motif_291 | ABFs binding site motif | Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element | Upstream | -192 |
Motif_336 | MYBMOUSE | Binding site for mouse c-myb protein | Upstream | -264 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -192 |
| | | Upstream | -214 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -192 |
| | | Upstream | -214 |
Motif_484 | RAV1-B binding site motif | Binding consensus sequence of an Arabidopsis transcription factor, RAV1; RAV1 specifically binds to DNA with bipartite sequence motifs of RAV1-A (CAACA) and RAV1-B (CACCTG); RAV1 protein contain AP2-like and B3-like domains; The AP2-like and B3-like domains recognize the CAACA and CACCTG motifs, respectively; The expression level of RAV1 were relatively high in rosette leaves and roots; RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants | Upstream | -151 |
Motif_490 | PROLAMINBOXOSGLUB1 | Prolamine box found in the rice GluB-1 gene promoter; Involved in quantitative regulation of the GluB-1 gene | Upstream | -926 |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -193 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -193 |
Motif_638 | ABRE binding site motif | Not available | Upstream | -192 |
Motif_641 | LRENPCABE | LRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241 | Upstream | -193 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Downstream | 1468 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Downstream | 1468 |
Motif_92 | ABREATRD22 | ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22 | Upstream | -191 |