View conserved binding sites


Gene
PPE_001G00170
Description
responsive transcription factor ERF015
Alias
ppa017280m.g;ppa017280m;PAC:17647316;ppa017280m
Binding siteNameDescriptionLocationPosition
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-189
Upstream-190
Upstream-212
Matrix_113ABI5Not availableUpstream-191
Upstream-192
Upstream-212
Matrix_129ABF1Not availableUpstream-190
Upstream-191
Matrix_14ZCW32;AT5G62610Not availableUpstream-191
Upstream-192
Matrix_150UNE10;PIF7Not availableUpstream-191
Upstream-192
Upstream-214
Matrix_156POC1Not availableUpstream-191
Upstream-192
Upstream-214
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-190
Upstream-191
Matrix_192FHY3/FAR1Not availableUpstream-191
Upstream-192
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-190
Upstream-191
Upstream-213
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-191
Upstream-192
Matrix_296GBF2Not availableUpstream-191
Upstream-192
Matrix_300bZIP68;bZIP16Not availableUpstream-191
Upstream-192
Matrix_301PIL5Not availableUpstream-208
Matrix_332SPT;ALCNot availableUpstream-191
Upstream-192
Upstream-214
Matrix_338AP2Not availableUpstream-187
Upstream-188
Matrix_356PRR5Not availableUpstream-183
Upstream-184
Matrix_365AT1G10120;AT1G25330;CIB5;AT1G68920;AT3G23690;CIB1Not availableUpstream-191
Upstream-192
Matrix_369AT2G18300Not availableUpstream-188
Upstream-189
Matrix_389ILR3Not availableUpstream-190
Upstream-191
Matrix_476bHLH115;bHLH34Not availableUpstream-191
Upstream-192
Matrix_480BES1Not availableUpstream-190
Upstream-191
Matrix_488ABF1Not availableUpstream-189
Upstream-190
Matrix_53MYC3Not availableUpstream-215
Matrix_55PIF3Not availableUpstream-212
Matrix_60AT1G01260;AT5G57150Not availableUpstream-191
Upstream-192
Matrix_64PIF5Not availableUpstream-214
Matrix_7PIF4Not availableUpstream-192
Upstream-193
Matrix_77PRR5Not availableUpstream-188
Upstream-189
Matrix_80BIM1Not availableUpstream-212
Motif_122TGTCACACMCUCUMISINTGTCACA motif found in the region (from -254 to -215) of cucumisin (a subtilisin-like serine protease) in the fruit of melon; A novel enhancer element necessary for fruit-specific expression of the cucumisin geneUpstream-180
Motif_125BOXIINTPATPBBox II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoterUpstream-255
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-191
Upstream-213
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-192
Upstream-214
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-264
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-151
Upstream-192
Upstream-248
Upstream-264
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-191
Upstream-192
Upstream-214
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-264
Motif_244ABRE-like binding site motifNot availableUpstream-192
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-192
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-264
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-192
Upstream-214
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-192
Upstream-214
Motif_484RAV1-B binding site motifBinding consensus sequence of an Arabidopsis transcription factor, RAV1; RAV1 specifically binds to DNA with bipartite sequence motifs of RAV1-A (CAACA) and RAV1-B (CACCTG); RAV1 protein contain AP2-like and B3-like domains; The AP2-like and B3-like domains recognize the CAACA and CACCTG motifs, respectively; The expression level of RAV1 were relatively high in rosette leaves and roots; RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plantsUpstream-151
Motif_490PROLAMINBOXOSGLUB1Prolamine box found in the rice GluB-1 gene promoter; Involved in quantitative regulation of the GluB-1 geneUpstream-926
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-193
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-193
Motif_638ABRE binding site motifNot availableUpstream-192
Motif_641LRENPCABELRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241Upstream-193
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionDownstream1468
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionDownstream1468
Motif_92ABREATRD22ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22Upstream-191