View conserved binding sites


Gene
PPE_001G00080
Description
90 kDa heat shock protein ATPase homolog 1
Alias
ppa011541m.g;ppa011541m;PAC:17663629;ppa011541m
Binding siteNameDescriptionLocationPosition
Matrix_208AP1Not availableIntron1327
Matrix_243RAP2.12;RAP2.2Not availableUpstream-75
Matrix_287ERF2Not availableUpstream-74
Matrix_334AT3G23230Not availableUpstream-75
Matrix_344ATERF15;AT4G18450Not availableUpstream-74
Matrix_360ORA59Not availableUpstream-74
Matrix_374AT5G07580;AT5G61590Not availableUpstream-74
Matrix_405DREB2CNot availableUpstream-75
Matrix_423AT3G04030Not availableIntron4337
Matrix_426CRF1;CRF2Not availableUpstream-75
Matrix_482AT2G25650;AT4G00270Not availableUpstream-76
Matrix_484ATERF13Not availableUpstream-74
Matrix_493AT1G22985;AT1G71130Not availableUpstream-74
Matrix_91CRF3Not availableUpstream-74
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-87
Motif_233DRE1COREZMRAB17DRE1 core found in maize rab17 gene promoter; DRE1 was protected, in in vivo footprinting, by a protein in embryos specifically, but in leaves, was protected when was treated with ABA and drought; rab17 is expressed during late embryogenesis, and is induced by ABAUpstream-539
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-75
Motif_365ARF1 binding site motifARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factorsIntron559