View conserved binding sites


Gene
GM20G33990
Description
Non-lysosomal glucosylceramidase
Alias
Glyma20g33990;Glyma20g33990.1;PAC:26337593;Glyma20g33990.1
Binding siteNameDescriptionLocationPosition
Matrix_146ORA47Not availableUpstream-277
Matrix_147ERF3;AT1G80580Not availableUpstream-277
Matrix_224ERF1Not availableUpstream-278
Matrix_234RAP2.3Not availableUpstream-277
Matrix_261ATERF-1Not availableUpstream-277
Matrix_272DEAR4Not availableUpstream-277
Matrix_287ERF2Not availableUpstream-277
Matrix_288RAP2.3Not availableUpstream-278
Matrix_295ERF1Not availableUpstream-277
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-278
Matrix_334AT3G23230Not availableUpstream-276
Matrix_355ERF10;ERF11Not availableUpstream-278
Matrix_360ORA59Not availableUpstream-277
Matrix_363RAP2.3Not availableUpstream-278
Matrix_378ATERF1Not availableUpstream-277
Matrix_406ATERF-7Not availableUpstream-279
Matrix_409DEAR3Not availableUpstream-278
Matrix_414AGL15Not availableUpstream-354
Matrix_426CRF1;CRF2Not availableUpstream-276
Matrix_45DRNNot availableUpstream-277
Matrix_462ATERF-8Not availableUpstream-279
Matrix_484ATERF13Not availableUpstream-277
Matrix_493AT1G22985;AT1G71130Not availableUpstream-277
Matrix_50ATERF14;AT5G43410Not availableUpstream-278
Matrix_506DRNL;ATERF-4Not availableUpstream-276
Matrix_517ERF12Not availableUpstream-277
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-278
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-276
Matrix_91CRF3Not availableUpstream-277
Motif_192BOXLCOREDCPALConsensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitroIntron4654
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisIntron4653
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesIntron4654
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesIntron4654
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-276
Motif_391REALPHALGLHCB21REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulationIntron4656
Motif_419MYB4 binding site motifNot availableIntron4654
Motif_426MYB58;MYB63MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in ArabidopsisIntron4654
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsUpstream-261
Motif_591CBFHVBinding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs)Upstream-326
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisIntron4657
Motif_666MYB binding site promoterA flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genesIntron4654
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-359
Upstream-357
Upstream-355