Matrix_106 | AT5G47390 | Not available | Upstream | -78 |
| | | Upstream | -79 |
| | | Upstream | -104 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -96 |
| | | Upstream | -97 |
| | | Upstream | -224 |
| | | Upstream | -225 |
Matrix_146 | ORA47 | Not available | Upstream | -253 |
| | | Upstream | -254 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -243 |
Matrix_154 | AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130 | Not available | Upstream | -372 |
| | | Upstream | -373 |
Matrix_171 | LBD3;LBD4 | Not available | Upstream | -254 |
| | | Upstream | -255 |
| | | Upstream | -256 |
| | | Upstream | -257 |
Matrix_179 | AtMYB84;MYB36;MYB68;O49746_ARATH | Not available | Upstream | -89 |
Matrix_181 | Dof5.7 | Not available | Upstream | -107 |
Matrix_19 | PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling | Upstream | -203 |
Matrix_224 | ERF1 | Not available | Upstream | -254 |
| | | Upstream | -255 |
Matrix_24 | POC1 | Not available | Upstream | -243 |
| | | Upstream | -244 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -254 |
| | | Upstream | -255 |
Matrix_247 | PIF3 | Not available | Upstream | -256 |
Matrix_252 | RAP2.6 | Not available | Upstream | -253 |
| | | Upstream | -254 |
Matrix_259 | AT1G50680;AT1G51120 | Not available | Upstream | -256 |
Matrix_272 | DEAR4 | Not available | Upstream | -253 |
| | | Upstream | -254 |
Matrix_280 | TCP24;TCP1;BRC2;ATTCP18 | Not available | Upstream | -224 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -254 |
| | | Upstream | -255 |
Matrix_345 | POC1 | Not available | Upstream | -244 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -254 |
| | | Upstream | -255 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -254 |
| | | Upstream | -255 |
| | | Upstream | -372 |
Matrix_378 | ATERF1 | Not available | Upstream | -253 |
| | | Upstream | -254 |
Matrix_401 | MYB55 | Not available | Upstream | -350 |
| | | Upstream | -382 |
| | | Upstream | -386 |
Matrix_406 | ATERF-7 | Not available | Upstream | -255 |
| | | Upstream | -256 |
Matrix_409 | DEAR3 | Not available | Upstream | -254 |
| | | Upstream | -255 |
Matrix_416 | ASL5 | Not available | Upstream | -254 |
| | | Upstream | -255 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -254 |
| | | Upstream | -255 |
Matrix_438 | AtbZIP63 | Not available | Upstream | -201 |
Matrix_455 | MYB111 | Not available | Upstream | -382 |
Matrix_456 | bZIP60 | Not available | Upstream | -203 |
Matrix_473 | RRTF1 | Not available | Upstream | -253 |
| | | Upstream | -254 |
Matrix_48 | PI | Not available | Upstream | -263 |
Matrix_488 | ABF1 | Not available | Upstream | -246 |
| | | Upstream | -247 |
| | | Upstream | -581 |
| | | Upstream | -660 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -254 |
| | | Upstream | -255 |
Matrix_496 | ATMYB15 | Not available | Upstream | -379 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -254 |
| | | Upstream | -255 |
Matrix_510 | AtMYB84 | More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana | Upstream | -347 |
| | | Upstream | -379 |
| | | Upstream | -383 |
Matrix_514 | DYT1 | Regulation of the Arabidopsis anther transcriptome by DYT1 for pollen development | Upstream | -659 |
Matrix_517 | ERF12 | Not available | Upstream | -255 |
| | | Upstream | -256 |
Matrix_56 | BZIP17;BZIP28;BZIP49 | Not available | Upstream | -202 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -254 |
| | | Upstream | -255 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -254 |
| | | Upstream | -255 |
Matrix_91 | CRF3 | Not available | Upstream | -254 |
| | | Upstream | -255 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Upstream | -196 |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Upstream | -250 |
Motif_168 | IBOX | I box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated gene | Upstream | -81 |
Motif_174 | SREATMSD | sugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in Arabidopsis | Upstream | -80 |
Motif_181 | IBOXCORENT | I-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regions | Upstream | -81 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -249 |
Motif_292 | MYBPZM | Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes | Upstream | -1 |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -257 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -205 |
Motif_399 | UPRMOTIFIAT | Motif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc. | Upstream | -204 |
Motif_440 | TGA1 binding site motif | Hex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG | Upstream | -204 |
Motif_453 | HEXMOTIFTAH3H4 | hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding site | Upstream | -204 |
Motif_48 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -251 |
Motif_552 | MRE1 | MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1 | Upstream | -98 |
Motif_567 | T/GBOXATPIN2 | T/G-box found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognize this motif | Upstream | -249 |
Motif_57 | ABREOSRAB21 | ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em gene | Upstream | -250 |
Motif_576 | TGACGTVMAMY | TGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seeds | Upstream | -204 |
Motif_585 | ATB2/AtbZIP53/AtbZIP44/GBF5 BS in ProDH | PRE (Pro- or hypoosmolarity-responsive element) found in the promoter region of proline dehydrogenase (ProDH) gene in Arabidopsis; Core of 9-bp sequence ACTCATCCT which is necessary for the efficient expression of ProDH in response to L-Pro and hypoosmolarity; ATB2-binding site; Similar to GCN4 motif (ATGA(C/G)TCAT); ATB2 subgroup of bZIP transcription factors function as transcriptional activator for hypoosmolarity-inducible ProDH; A Novel Subgroup of bZIP Proteins Functions as Transctiptional Activators in Hypsosmolarity-Responsive Expression of the ProDH gene in Arabidopsis | Upstream | -199 |
Motif_79 | UPRMOTIFIIAT | Motif II in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc | Upstream | -207 |