View conserved binding sites


Gene
GM18G48343
Description
No description available
Alias
Glyma18g48343;Glyma18g48343.1;PAC:26356979;Glyma18g48343.1
Binding siteNameDescriptionLocationPosition
Matrix_106AT5G47390Not availableUpstream-78
Upstream-79
Upstream-104
Matrix_110ATABI4;AT3G57600Not availableUpstream-96
Upstream-97
Upstream-224
Upstream-225
Matrix_146ORA47Not availableUpstream-253
Upstream-254
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-243
Matrix_154AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130Not availableUpstream-372
Upstream-373
Matrix_171LBD3;LBD4Not availableUpstream-254
Upstream-255
Upstream-256
Upstream-257
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableUpstream-89
Matrix_181Dof5.7Not availableUpstream-107
Matrix_19PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signalingUpstream-203
Matrix_224ERF1Not availableUpstream-254
Upstream-255
Matrix_24POC1Not availableUpstream-243
Upstream-244
Matrix_243RAP2.12;RAP2.2Not availableUpstream-254
Upstream-255
Matrix_247PIF3Not availableUpstream-256
Matrix_252RAP2.6Not availableUpstream-253
Upstream-254
Matrix_259AT1G50680;AT1G51120Not availableUpstream-256
Matrix_272DEAR4Not availableUpstream-253
Upstream-254
Matrix_280TCP24;TCP1;BRC2;ATTCP18Not availableUpstream-224
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-254
Upstream-255
Matrix_345POC1Not availableUpstream-244
Matrix_355ERF10;ERF11Not availableUpstream-254
Upstream-255
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-254
Upstream-255
Upstream-372
Matrix_378ATERF1Not availableUpstream-253
Upstream-254
Matrix_401MYB55Not availableUpstream-350
Upstream-382
Upstream-386
Matrix_406ATERF-7Not availableUpstream-255
Upstream-256
Matrix_409DEAR3Not availableUpstream-254
Upstream-255
Matrix_416ASL5Not availableUpstream-254
Upstream-255
Matrix_426CRF1;CRF2Not availableUpstream-254
Upstream-255
Matrix_438AtbZIP63Not availableUpstream-201
Matrix_455MYB111Not availableUpstream-382
Matrix_456bZIP60Not availableUpstream-203
Matrix_473RRTF1Not availableUpstream-253
Upstream-254
Matrix_48PINot availableUpstream-263
Matrix_488ABF1Not availableUpstream-246
Upstream-247
Upstream-581
Upstream-660
Matrix_493AT1G22985;AT1G71130Not availableUpstream-254
Upstream-255
Matrix_496ATMYB15Not availableUpstream-379
Matrix_50ATERF14;AT5G43410Not availableUpstream-254
Upstream-255
Matrix_510AtMYB84More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaUpstream-347
Upstream-379
Upstream-383
Matrix_514DYT1Regulation of the Arabidopsis anther transcriptome by DYT1 for pollen developmentUpstream-659
Matrix_517ERF12Not availableUpstream-255
Upstream-256
Matrix_56BZIP17;BZIP28;BZIP49Not availableUpstream-202
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-254
Upstream-255
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-254
Upstream-255
Matrix_91CRF3Not availableUpstream-254
Upstream-255
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-196
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-250
Motif_168IBOXI box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated geneUpstream-81
Motif_174SREATMSDsugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in ArabidopsisUpstream-80
Motif_181IBOXCORENTI-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regionsUpstream-81
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-249
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-1
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-257
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-205
Motif_399UPRMOTIFIATMotif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc.Upstream-204
Motif_440TGA1 binding site motifHex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGGUpstream-204
Motif_453HEXMOTIFTAH3H4hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding siteUpstream-204
Motif_48BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-251
Motif_552MRE1MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1Upstream-98
Motif_567T/GBOXATPIN2T/G-box found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognize this motifUpstream-249
Motif_57ABREOSRAB21ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em geneUpstream-250
Motif_576TGACGTVMAMYTGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seedsUpstream-204
Motif_585ATB2/AtbZIP53/AtbZIP44/GBF5 BS in ProDHPRE (Pro- or hypoosmolarity-responsive element) found in the promoter region of proline dehydrogenase (ProDH) gene in Arabidopsis; Core of 9-bp sequence ACTCATCCT which is necessary for the efficient expression of ProDH in response to L-Pro and hypoosmolarity; ATB2-binding site; Similar to GCN4 motif (ATGA(C/G)TCAT); ATB2 subgroup of bZIP transcription factors function as transcriptional activator for hypoosmolarity-inducible ProDH; A Novel Subgroup of bZIP Proteins Functions as Transctiptional Activators in Hypsosmolarity-Responsive Expression of the ProDH gene in ArabidopsisUpstream-199
Motif_79UPRMOTIFIIATMotif II in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etcUpstream-207