Matrix_116 | ANAC55 | Not available | Upstream | -156 |
Matrix_119 | RRTF1 | Not available | Upstream | -331 |
Matrix_138 | RRTF1 | Not available | Upstream | -331 |
Matrix_146 | ORA47 | Not available | Upstream | -332 |
Matrix_148 | WRKY60 | Not available | Upstream | -321 |
Matrix_223 | MYB60;ATMYB31;ATMYB30;MYB94;MYBCOV1 | Not available | Upstream | -323 |
Matrix_224 | ERF1 | Not available | Upstream | -331 |
Matrix_234 | RAP2.3 | Not available | Upstream | -332 |
Matrix_261 | ATERF-1 | Not available | Upstream | -331 |
Matrix_277 | RAP2.6 | Not available | Upstream | -331 |
Matrix_287 | ERF2 | Not available | Upstream | -332 |
Matrix_288 | RAP2.3 | Not available | Upstream | -331 |
Matrix_295 | ERF1 | Not available | Upstream | -330 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -331 |
Matrix_334 | AT3G23230 | Not available | Upstream | -331 |
Matrix_343 | AT2G33710 | Not available | Upstream | -332 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -331 |
Matrix_360 | ORA59 | Not available | Upstream | -330 |
Matrix_363 | RAP2.3 | Not available | Upstream | -331 |
Matrix_370 | WRKY50;WRKY51 | Not available | Upstream | -321 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -331 |
Matrix_378 | ATERF1 | Not available | Upstream | -332 |
Matrix_39 | AP1 | Not available | Upstream | -139 |
Matrix_406 | ATERF-7 | Not available | Upstream | -330 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -331 |
Matrix_469 | NAC041;NAC083 | Not available | Upstream | -155 |
Matrix_470 | WRKY18 | Not available | Upstream | -321 |
Matrix_473 | RRTF1 | Not available | Upstream | -332 |
Matrix_48 | PI | Not available | Upstream | -139 |
Matrix_484 | ATERF13 | Not available | Upstream | -330 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -331 |
Matrix_496 | ATMYB15 | Not available | Upstream | -328 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -331 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -331 |
Matrix_91 | CRF3 | Not available | Upstream | -331 |
Motif_174 | SREATMSD | sugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in Arabidopsis | Upstream | -162 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Upstream | -324 |
Motif_270 | ELRECOREPCRP1 | ElRE (Elicitor Responsive Element) core of parsley PR1 genes; consensus sequence of elements W1 and W2 of parsley PR1-1 and PR1-2 promoters; Box W1 and W2 are the binding site of WRKY1 and WRKY2, respectively; ERE; WA box; One of the W boxes found in the Parsley WRKY1 gene promoter; Required for elicitor responsiveness; WC box WB box and WC box constitute a palindrome; WRKY1 protein binding site; W-box found in thioredoxin h5 gene in Arabidopsis | Upstream | -319 |
Motif_292 | MYBPZM | Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes | Upstream | -325 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -329 |
Motif_320 | AGCBOXNPGLB | AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box | Upstream | -330 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -154 |
Motif_348 | WBBOXPCWRKY1 | WB box; WRKY proteins bind specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box; Found in amylase gene in sweet potato, alpha-Amy2 genes in wheat, barley, and wild oat, PR1 gene in parsley, and a transcription factor gene in Arabidopsis | Upstream | -319 |
Motif_391 | REALPHALGLHCB21 | REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulation | Upstream | -166 |
Motif_50 | AtERF-7;AtERF-4;AtERF-3;AtERF-1;AtERF-2;AtERF-5 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses | Upstream | -331 |
Motif_618 | MYB1AT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis | Upstream | -165 |
| | | Upstream | -150 |
Motif_628 | TATCCAOSAMY | TATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2 | Upstream | -161 |
Motif_642 | SEF1MOTIF | SEF1 (soybean embryo factor 1) binding motif; sequence found in 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S globulin) gene | Upstream | -961 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -145 |
| | | Downstream | 3168 |
Motif_667 | TATABOXOSPAL | Binding site for OsTBP2, found in the promoter of rice pal gene encoding phenylalanine ammonia-lyase; OsTFIIB stimulated the DNA binding and bending activities of OsTBP2 and synergistically enhanced OsTBP2-mediated transcription from the pal promoter | Upstream | -960 |
Motif_70 | CANBNNAPA | Core of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressor | Upstream | -158 |
Motif_98 | SEF3MOTIFGM | SEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4 | Upstream | -314 |