View conserved binding sites


Gene
GM18G06360
Description
WRKY transcription factor 33
Alias
Glyma18g06360;Glyma18g06360.2;PAC:26355749;Glyma18g06360.2
Binding siteNameDescriptionLocationPosition
Matrix_116ANAC55Not availableUpstream-156
Matrix_119RRTF1Not availableUpstream-331
Matrix_138RRTF1Not availableUpstream-331
Matrix_146ORA47Not availableUpstream-332
Matrix_148WRKY60Not availableUpstream-321
Matrix_223MYB60;ATMYB31;ATMYB30;MYB94;MYBCOV1Not availableUpstream-323
Matrix_224ERF1Not availableUpstream-331
Matrix_234RAP2.3Not availableUpstream-332
Matrix_261ATERF-1Not availableUpstream-331
Matrix_277RAP2.6Not availableUpstream-331
Matrix_287ERF2Not availableUpstream-332
Matrix_288RAP2.3Not availableUpstream-331
Matrix_295ERF1Not availableUpstream-330
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-331
Matrix_334AT3G23230Not availableUpstream-331
Matrix_343AT2G33710Not availableUpstream-332
Matrix_355ERF10;ERF11Not availableUpstream-331
Matrix_360ORA59Not availableUpstream-330
Matrix_363RAP2.3Not availableUpstream-331
Matrix_370WRKY50;WRKY51Not availableUpstream-321
Matrix_374AT5G07580;AT5G61590Not availableUpstream-331
Matrix_378ATERF1Not availableUpstream-332
Matrix_39AP1Not availableUpstream-139
Matrix_406ATERF-7Not availableUpstream-330
Matrix_426CRF1;CRF2Not availableUpstream-331
Matrix_469NAC041;NAC083Not availableUpstream-155
Matrix_470WRKY18Not availableUpstream-321
Matrix_473RRTF1Not availableUpstream-332
Matrix_48PINot availableUpstream-139
Matrix_484ATERF13Not availableUpstream-330
Matrix_493AT1G22985;AT1G71130Not availableUpstream-331
Matrix_496ATMYB15Not availableUpstream-328
Matrix_50ATERF14;AT5G43410Not availableUpstream-331
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-331
Matrix_91CRF3Not availableUpstream-331
Motif_174SREATMSDsugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in ArabidopsisUpstream-162
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-324
Motif_270ELRECOREPCRP1ElRE (Elicitor Responsive Element) core of parsley PR1 genes; consensus sequence of elements W1 and W2 of parsley PR1-1 and PR1-2 promoters; Box W1 and W2 are the binding site of WRKY1 and WRKY2, respectively; ERE; WA box; One of the W boxes found in the Parsley WRKY1 gene promoter; Required for elicitor responsiveness; WC box WB box and WC box constitute a palindrome; WRKY1 protein binding site; W-box found in thioredoxin h5 gene in ArabidopsisUpstream-319
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-325
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-329
Motif_320AGCBOXNPGLBAGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC boxUpstream-330
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-154
Motif_348WBBOXPCWRKY1WB box; WRKY proteins bind specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box; Found in amylase gene in sweet potato, alpha-Amy2 genes in wheat, barley, and wild oat, PR1 gene in parsley, and a transcription factor gene in ArabidopsisUpstream-319
Motif_391REALPHALGLHCB21REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulationUpstream-166
Motif_50AtERF-7;AtERF-4;AtERF-3;AtERF-1;AtERF-2;AtERF-5Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responsesUpstream-331
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisUpstream-165
Upstream-150
Motif_628TATCCAOSAMYTATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2Upstream-161
Motif_642SEF1MOTIFSEF1 (soybean embryo factor 1) binding motif; sequence found in 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S globulin) geneUpstream-961
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-145
Downstream3168
Motif_667TATABOXOSPALBinding site for OsTBP2, found in the promoter of rice pal gene encoding phenylalanine ammonia-lyase; OsTFIIB stimulated the DNA binding and bending activities of OsTBP2 and synergistically enhanced OsTBP2-mediated transcription from the pal promoterUpstream-960
Motif_70CANBNNAPACore of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressorUpstream-158
Motif_98SEF3MOTIFGMSEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4Upstream-314