View conserved binding sites


Gene
GM16G27370
Description
toxin extrusion protein 1
Alias
Glyma16g27370;Glyma16g27370.1;PAC:26353786;Glyma16g27370.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-828
Matrix_119RRTF1Not availableUpstream-827
Matrix_135ABI3Not availableUpstream-250
Matrix_138RRTF1Not availableUpstream-827
Matrix_146ORA47Not availableUpstream-828
Matrix_147ERF3;AT1G80580Not availableUpstream-828
Matrix_184AGL15Not availableUpstream-23
Upstream-1890
Matrix_190ATERF1Not availableUpstream-828
Matrix_224ERF1Not availableUpstream-827
Matrix_234RAP2.3Not availableUpstream-828
Matrix_252RAP2.6Not availableUpstream-828
Matrix_261ATERF-1Not availableUpstream-828
Matrix_287ERF2Not availableUpstream-828
Matrix_288RAP2.3Not availableUpstream-827
Matrix_295ERF1Not availableUpstream-828
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-827
Matrix_334AT3G23230Not availableUpstream-828
Upstream-829
Matrix_343AT2G33710Not availableUpstream-828
Matrix_355ERF10;ERF11Not availableUpstream-827
Matrix_360ORA59Not availableUpstream-828
Matrix_363RAP2.3Not availableUpstream-827
Matrix_374AT5G07580;AT5G61590Not availableUpstream-830
Matrix_378ATERF1Not availableUpstream-828
Matrix_405DREB2CNot availableUpstream-828
Matrix_406ATERF-7Not availableUpstream-826
Matrix_414AGL15Not availableUpstream-650
Upstream-861
Upstream-1484
Matrix_426CRF1;CRF2Not availableUpstream-828
Upstream-829
Matrix_45DRNNot availableUpstream-828
Matrix_462ATERF-8Not availableUpstream-826
Matrix_473RRTF1Not availableUpstream-828
Matrix_484ATERF13Not availableUpstream-828
Matrix_493AT1G22985;AT1G71130Not availableUpstream-828
Matrix_50ATERF14;AT5G43410Not availableUpstream-827
Matrix_506DRNL;ATERF-4Not availableUpstream-828
Upstream-829
Matrix_517ERF12Not availableUpstream-828
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-828
Upstream-829
Matrix_91CRF3Not availableUpstream-828
Motif_286SEBFCONSSTPR10ABinding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response elementUpstream-344
Upstream-898
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-828
Motif_642SEF1MOTIFSEF1 (soybean embryo factor 1) binding motif; sequence found in 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S globulin) geneUpstream-1075
Upstream-1236
Upstream-1320
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-862
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-862
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-855