| Matrix_119 | RRTF1 | Not available | Upstream | -409 |
| Matrix_138 | RRTF1 | Not available | Upstream | -409 |
| Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -409 |
| Matrix_224 | ERF1 | Not available | Upstream | -409 |
| Matrix_234 | RAP2.3 | Not available | Upstream | -410 |
| Matrix_288 | RAP2.3 | Not available | Upstream | -409 |
| Matrix_295 | ERF1 | Not available | Upstream | -408 |
| Matrix_334 | AT3G23230 | Not available | Upstream | -409 |
| Matrix_355 | ERF10;ERF11 | Not available | Upstream | -409 |
| Matrix_363 | RAP2.3 | Not available | Upstream | -409 |
| Matrix_378 | ATERF1 | Not available | Upstream | -410 |
| Matrix_406 | ATERF-7 | Not available | Upstream | -408 |
| Matrix_426 | CRF1;CRF2 | Not available | Upstream | -409 |
| Matrix_473 | RRTF1 | Not available | Upstream | -410 |
| Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -409 |
| Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -409 |
| Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -46 |
| Motif_279 | POLASIG3 | Plant polyA signal; Consensus sequence for plant polyadenylation signal | Upstream | -36 |
| Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -407 |
| Motif_321 | TATABOX5 | TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis | Upstream | -37 |
| Motif_85 | SORLIP5AT | one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Upstream | -436 |
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