View conserved binding sites


Gene
GM15G42080
Description
CTP synthase
Alias
Glyma15g42080;Glyma15g42080.1;PAC:26330384;Glyma15g42080.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-845
Matrix_119RRTF1Not availableUpstream-844
Matrix_138RRTF1Not availableUpstream-844
Matrix_146ORA47Not availableUpstream-845
Matrix_147ERF3;AT1G80580Not availableUpstream-843
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-844
Matrix_171LBD3;LBD4Not availableUpstream-844
Matrix_190ATERF1Not availableUpstream-846
Matrix_224ERF1Not availableUpstream-844
Matrix_234RAP2.3Not availableUpstream-845
Matrix_243RAP2.12;RAP2.2Not availableUpstream-844
Matrix_252RAP2.6Not availableUpstream-845
Matrix_261ATERF-1Not availableUpstream-844
Matrix_272DEAR4Not availableUpstream-845
Matrix_287ERF2Not availableUpstream-845
Matrix_288RAP2.3Not availableUpstream-844
Matrix_295ERF1Not availableUpstream-843
Matrix_321HRDNot availableUpstream-844
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-844
Matrix_334AT3G23230Not availableUpstream-844
Matrix_343AT2G33710Not availableUpstream-845
Matrix_355ERF10;ERF11Not availableUpstream-844
Matrix_360ORA59Not availableUpstream-843
Matrix_363RAP2.3Not availableUpstream-844
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-844
Matrix_378ATERF1Not availableUpstream-845
Matrix_401MYB55Not availableUpstream-848
Matrix_406ATERF-7Not availableUpstream-843
Matrix_407AP1Not availableUpstream-268
Matrix_409DEAR3Not availableUpstream-844
Matrix_426CRF1;CRF2Not availableUpstream-844
Matrix_45DRNNot availableUpstream-843
Matrix_462ATERF-8Not availableUpstream-843
Matrix_473RRTF1Not availableUpstream-845
Matrix_484ATERF13Not availableUpstream-843
Matrix_493AT1G22985;AT1G71130Not availableUpstream-844
Matrix_50ATERF14;AT5G43410Not availableUpstream-844
Matrix_506DRNL;ATERF-4Not availableUpstream-844
Matrix_517ERF12Not availableUpstream-843
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-844
Matrix_84AtGRF6Not availableUpstream-845
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-844
Matrix_91CRF3Not availableUpstream-844
Motif_168IBOXI box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated geneUpstream-328
Motif_174SREATMSDsugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in ArabidopsisUpstream-327
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Downstream5443
Motif_183TRANSINITDICOTSContext sequence of translational initiation codon in dicotsUpstream-862
Motif_210REBETALGLHCB21REbeta found in Lemna gibba Lhcb21 gene promoter; Located at -114 to -109; A GATA sequence created at a position six nucleotides upstream could replace the function of REbeta; Required for phytochrome regulationUpstream-326
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-267
Downstream5431
Downstream5443
Motif_258-10PEHVPSBD-10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A lightUpstream-471
Motif_279POLASIG3Plant polyA signal; Consensus sequence for plant polyadenylation signalUpstream-473
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-808
Upstream-243
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-842
Motif_336MYBMOUSEBinding site for mouse c-myb proteinDownstream5443
Motif_495TRANSINITMONOCOTSContext sequence of translational initiation codon in monocotsUpstream-862
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-815
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-244
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-815
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-804
Upstream-786
Motif_88MYB2ATBinding site for ATMYB2, an Arabidopsis MYB homolog; ATMYB2 binds oligonucleotides that contained a consensus MYB recognition sequence (TAACTG), such as is in the SV40 enhancer and the maize bronze-1 promoter; ATMYB2 is involved in regulation of genes that are responsive to water stress in ArabidopsisDownstream5443