View conserved binding sites


Gene
GM15G06570
Description
Transcription factor GTE3, chloroplastic
Alias
Glyma15g06570;Glyma15g06570.1;PAC:26332744;Glyma15g06570.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-145
Upstream-146
Matrix_104PINot availableUpstream-426
Upstream-427
Matrix_105SPL14Not availableUpstream-13
Upstream-14
Matrix_109GBF3Not availableUpstream-102
Upstream-426
Upstream-427
Upstream-428
Upstream-429
Matrix_110ATABI4;AT3G57600Not availableUpstream-145
Upstream-146
Upstream-158
Matrix_113ABI5Not availableUpstream-426
Upstream-427
Upstream-428
Upstream-429
Matrix_117ANTNot availableUpstream-440
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-100
Upstream-423
Upstream-424
Matrix_120BEE2Not availableUpstream-427
Upstream-428
Matrix_122ABF1;AREB2Not availableUpstream-427
Upstream-428
Matrix_129ABF1Not availableUpstream-427
Upstream-428
Matrix_134ABF1Not availableUpstream-427
Upstream-428
Matrix_137SPL1;SPL12Not availableUpstream-18
Matrix_138RRTF1Not availableUpstream-147
Matrix_14ZCW32;AT5G62610Not availableUpstream-104
Matrix_142ZFP8Not availableUpstream-48
Matrix_143GATA14;GATA6;GATA5Not availableUpstream-389
Upstream-390
Upstream-391
Upstream-392
Upstream-440
Upstream-441
Upstream-442
Upstream-443
Matrix_145GBF4;AT5G44080Not availableUpstream-428
Upstream-429
Matrix_146ORA47Not availableUpstream-145
Upstream-146
Matrix_147ERF3;AT1G80580Not availableUpstream-147
Matrix_151ASIL1Not availableUpstream-42
Upstream-43
Upstream-147
Upstream-150
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-146
Upstream-147
Matrix_156POC1Not availableUpstream-102
Upstream-426
Upstream-427
Matrix_161MYBC1;AT3G10760;LUX;AT5G05090;AT5G59570Not availableUpstream-441
Matrix_169E2F1Not availableUpstream-144
Upstream-145
Matrix_180SPL1Not availableUpstream-18
Matrix_183BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-121
Upstream-122
Upstream-141
Upstream-142
Matrix_186FHY3Not availableUpstream-121
Upstream-122
Upstream-141
Upstream-142
Matrix_188SPL4Not availableUpstream-17
Upstream-20
Matrix_190ATERF1Not availableUpstream-144
Upstream-145
Upstream-146
Matrix_192FHY3/FAR1Not availableUpstream-424
Upstream-425
Upstream-428
Upstream-429
Matrix_194HYH;HY5Not availableUpstream-424
Upstream-425
Matrix_195GATA2;GATA4Not availableUpstream-390
Upstream-441
Matrix_199AT1G69170;SPL9;SPL15;SPL13A;SPL13BNot availableUpstream-18
Upstream-19
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-427
Upstream-428
Matrix_203GATA9;GATA12Not availableUpstream-389
Upstream-390
Upstream-391
Matrix_21HSFC1Not availableUpstream-297
Matrix_214AP1Not availableUpstream-425
Upstream-426
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-424
Upstream-425
Upstream-428
Upstream-429
Matrix_221SPL7Not availableUpstream-17
Matrix_226GATA1Not availableUpstream-390
Upstream-391
Matrix_234RAP2.3Not availableUpstream-145
Upstream-146
Matrix_243RAP2.12;RAP2.2Not availableUpstream-146
Upstream-147
Matrix_246ARR10Molecular structure of the GARP family of plant Myb-related DNA binding motifs of the Arabidopsis response regulatorsUpstream-281
Upstream-282
Matrix_247PIF3Not availableUpstream-103
Upstream-427
Upstream-428
Matrix_252RAP2.6Not availableUpstream-145
Upstream-146
Matrix_256IXR11;KNAT5;KNAT4;KNAT3Not availableUpstream-370
Matrix_260CAMTA3Not availableUpstream-103
Matrix_261ATERF-1Not availableUpstream-146
Upstream-147
Matrix_264ATAREB1Not availableUpstream-424
Upstream-425
Upstream-427
Upstream-428
Matrix_272DEAR4Not availableUpstream-145
Upstream-146
Matrix_286GATA7Not availableUpstream-390
Upstream-391
Matrix_287ERF2Not availableUpstream-145
Matrix_288RAP2.3Not availableUpstream-147
Matrix_295ERF1Not availableUpstream-147
Matrix_296GBF2Not availableUpstream-103
Upstream-427
Upstream-428
Upstream-429
Matrix_300bZIP68;bZIP16Not availableUpstream-103
Upstream-427
Upstream-428
Upstream-429
Matrix_301PIL5Not availableUpstream-428
Upstream-429
Matrix_305PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-149
Upstream-288
Upstream-289
Matrix_307RGL2;RGL3Not availableUpstream-17
Matrix_31SPL1Not availableUpstream-17
Upstream-19
Matrix_313ATMYB65;MYB33Not availableUpstream-402
Matrix_321HRDNot availableUpstream-146
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-147
Matrix_328AT1G76580Not availableUpstream-18
Matrix_33SPL11;SPL10;SPL2Not availableUpstream-17
Matrix_331GBF1Not availableUpstream-426
Upstream-427
Upstream-428
Upstream-429
Matrix_332SPT;ALCNot availableUpstream-104
Upstream-427
Upstream-428
Matrix_333GATA3Not availableUpstream-391
Upstream-392
Matrix_334AT3G23230Not availableUpstream-146
Matrix_335HSFB2ANot availableUpstream-302
Matrix_338AP2Not availableUpstream-424
Upstream-425
Matrix_339bHLH104Not availableUpstream-427
Matrix_342SPL14Identification of a Consensus DNA-Binding Site for the Arabidopsis thaliana SBP Domain Transcription Factor, AtSPL14, and Binding Kinetics by Surface Plasmon ResonanceUpstream-13
Upstream-14
Matrix_343AT2G33710Not availableUpstream-145
Upstream-146
Matrix_344ATERF15;AT4G18450Not availableUpstream-147
Matrix_345POC1Not availableUpstream-100
Matrix_355ERF10;ERF11Not availableUpstream-147
Matrix_356PRR5Not availableUpstream-420
Upstream-421
Upstream-424
Upstream-425
Matrix_360ORA59Not availableUpstream-147
Matrix_363RAP2.3Not availableUpstream-147
Matrix_374AT5G07580;AT5G61590Not availableUpstream-146
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-146
Matrix_378ATERF1Not availableUpstream-145
Upstream-146
Matrix_38SPL14Not availableUpstream-18
Matrix_389ILR3Not availableUpstream-103
Upstream-427
Upstream-428
Matrix_403BZR1Not availableUpstream-101
Upstream-139
Upstream-140
Upstream-425
Upstream-426
Matrix_408GATA12Not availableUpstream-390
Upstream-391
Matrix_426CRF1;CRF2Not availableUpstream-146
Matrix_438AtbZIP63Not availableUpstream-427
Upstream-428
Matrix_443AGL15Not availableUpstream-425
Upstream-426
Matrix_448ATERF6Not availableUpstream-147
Upstream-150
Matrix_45DRNNot availableUpstream-147
Matrix_450SPL7Not availableUpstream-17
Upstream-19
Matrix_452MYB46Not availableDownstream2044
Matrix_462ATERF-8Not availableUpstream-148
Matrix_466PRR5Not availableUpstream-424
Matrix_473RRTF1Not availableUpstream-145
Upstream-146
Matrix_475AT5G64220Not availableUpstream-124
Upstream-125
Upstream-144
Upstream-145
Matrix_480BES1Not availableUpstream-426
Upstream-427
Matrix_484ATERF13Not availableUpstream-147
Matrix_488ABF1Not availableUpstream-141
Upstream-390
Upstream-391
Upstream-419
Upstream-420
Upstream-426
Upstream-427
Matrix_49FHY3/FAR1Not availableUpstream-118
Matrix_490AtMYB77;ATMYB44Not availableUpstream-404
Matrix_493AT1G22985;AT1G71130Not availableUpstream-146
Matrix_5AT5G51190;ERF104Not availableUpstream-147
Matrix_505GATA8Not availableUpstream-391
Upstream-392
Upstream-442
Upstream-443
Matrix_506DRNL;ATERF-4Not availableUpstream-146
Upstream-147
Matrix_517ERF12Not availableUpstream-147
Matrix_53MYC3Not availableUpstream-143
Upstream-144
Matrix_55PIF3Not availableUpstream-426
Upstream-427
Matrix_60AT1G01260;AT5G57150Not availableUpstream-428
Matrix_63ARR10Not availableUpstream-443
Matrix_65POC1;PIL1Not availableUpstream-428
Matrix_68AtMYB77More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana. Plant J 14: 273-84Upstream-400
Matrix_7PIF4Not availableUpstream-427
Upstream-428
Upstream-429
Upstream-430
Matrix_77PRR5Not availableUpstream-102
Upstream-120
Upstream-121
Upstream-140
Upstream-141
Upstream-425
Upstream-426
Upstream-427
Matrix_80BIM1Not availableUpstream-120
Upstream-121
Upstream-140
Upstream-141
Upstream-428
Upstream-429
Matrix_85SPL5Not availableUpstream-18
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-146
Upstream-147
Matrix_91CRF3Not availableUpstream-146
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-495
Upstream-517
Motif_150RBCSCONSENSUSrbcS general consensus sequence; AATCCAA or AATCCAACUpstream-480
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-429
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-129
Upstream-321
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-429
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFUpstream-427
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-104
Upstream-123
Upstream-143
Upstream-428
Upstream-429
Upstream-721
Upstream-722
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-129
Upstream-321
Upstream-406
Motif_223LTRE1HVBLT49LTRE-1 (low-temperature-responsive element) in barley (H.v.) blt4.9 gene promoter; A new LTRE; A previously known LTRE is CCGACUpstream-377
Motif_244ABRE-like binding site motifNot availableUpstream-427
Upstream-429
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-429
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-427
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-314
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-148
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-105
Upstream-124
Upstream-144
Upstream-722
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-129
Upstream-321
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-429
Motif_346SND1;VND6;VND7;NST1;NST2Global analysis of direct targets of secondary wall NAC master switches in ArabidopsisUpstream-392
Motif_383UPRE-III(bZIP60)The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in ArabidopsisUpstream-280
Motif_392PALBOXAPCBox A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box LUpstream-403
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-428
Motif_48BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-1705
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Upstream-413
Motif_542ABI5;AtMYC2;HY5A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth. Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesisUpstream-427
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-427
Motif_561GATA-2;GATA-4;GATA-3;GATA-1Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-254
Motif_584UPRE-III(bZIP60)The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in ArabidopsisUpstream-280
Motif_591CBFHVBinding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs)Upstream-434
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-112
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-427
Upstream-430
Motif_630WBOXNTCHN48W box identified in the region between -125 and -69 of a tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and NtWRKY4 bound to W box; NtWRKYs possibly involved in elicitor-respsonsive transcription of defense genes in tobaccoUpstream-83
Upstream-384
Motif_638ABRE binding site motifNot availableUpstream-427
Motif_641LRENPCABELRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241Upstream-426
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-134
Upstream-313
Upstream-414
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-112
Motif_688AMMORESIVDCRNIA1Motif (IVD) found in the Chlamydomonas Nia1 gene promoter; Located between -51 and -42; Involved in Nia1 transcription repressionUpstream-51
Upstream-220
Motif_72GADOWNATSequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABREUpstream-430
Motif_83CIACADIANLELHCRegion necessary for circadian expression of tomato Lhc geneUpstream-413
Motif_92ABREATRD22ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22Upstream-426