Matrix_101 | ERF5 | Not available | Upstream | -146 |
Matrix_104 | PI | Not available | Upstream | -424 |
Matrix_109 | GBF3 | Not available | Upstream | -423 |
| | | Upstream | -424 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -146 |
| | | Upstream | -158 |
Matrix_113 | ABI5 | Not available | Upstream | -423 |
| | | Upstream | -424 |
| | | Upstream | -426 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -421 |
| | | Upstream | -541 |
| | | Upstream | -542 |
Matrix_119 | RRTF1 | Not available | Upstream | -147 |
Matrix_120 | BEE2 | Not available | Upstream | -424 |
| | | Upstream | -425 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -425 |
Matrix_129 | ABF1 | Not available | Upstream | -424 |
| | | Upstream | -425 |
Matrix_130 | TCP16 | Not available | Upstream | -539 |
| | | Upstream | -540 |
Matrix_134 | ABF1 | Not available | Upstream | -424 |
| | | Upstream | -425 |
Matrix_138 | RRTF1 | Not available | Upstream | -147 |
Matrix_143 | GATA14;GATA6;GATA5 | Not available | Upstream | -388 |
Matrix_144 | AT5G08330;AT5G23280 | Not available | Upstream | -539 |
| | | Upstream | -540 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -425 |
| | | Upstream | -426 |
Matrix_146 | ORA47 | Not available | Upstream | -146 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -148 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -421 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -147 |
Matrix_156 | POC1 | Not available | Upstream | -423 |
| | | Upstream | -424 |
Matrix_16 | AT3G04450;PHL1 | Not available | Upstream | -28 |
Matrix_162 | AtPHR1 | Not available | Upstream | -28 |
Matrix_166 | TGA4 | Not available | Upstream | -552 |
| | | Upstream | -553 |
Matrix_169 | E2F1 | Not available | Upstream | -145 |
Matrix_171 | LBD3;LBD4 | Not available | Upstream | -530 |
| | | Upstream | -531 |
Matrix_179 | AtMYB84;MYB36;MYB68;O49746_ARATH | Not available | Upstream | -534 |
| | | Upstream | -535 |
Matrix_181 | Dof5.7 | Not available | Upstream | -249 |
Matrix_183 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -121 |
| | | Upstream | -122 |
| | | Upstream | -141 |
| | | Upstream | -142 |
Matrix_186 | FHY3 | Not available | Upstream | -121 |
| | | Upstream | -122 |
| | | Upstream | -142 |
| | | Upstream | -584 |
Matrix_19 | PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling | Upstream | -287 |
| | | Upstream | -288 |
Matrix_190 | ATERF1 | Not available | Upstream | -145 |
| | | Upstream | -146 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -421 |
| | | Upstream | -422 |
| | | Upstream | -426 |
Matrix_194 | HYH;HY5 | Not available | Upstream | -422 |
Matrix_195 | GATA2;GATA4 | Not available | Upstream | -387 |
Matrix_196 | TCP20;AT5G41030 | Not available | Upstream | -537 |
| | | Upstream | -538 |
| | | Upstream | -541 |
| | | Upstream | -542 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Upstream | -424 |
| | | Upstream | -425 |
Matrix_214 | AP1 | Not available | Upstream | -423 |
Matrix_216 | TCP16 | Not available | Upstream | -539 |
| | | Upstream | -540 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -421 |
| | | Upstream | -422 |
Matrix_224 | ERF1 | Not available | Upstream | -126 |
Matrix_232 | TCP23 | Not available | Upstream | -538 |
| | | Upstream | -539 |
| | | Upstream | -540 |
| | | Upstream | -541 |
Matrix_234 | RAP2.3 | Not available | Upstream | -125 |
| | | Upstream | -126 |
| | | Upstream | -146 |
Matrix_24 | POC1 | Not available | Upstream | -421 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -147 |
Matrix_246 | ARR10 | Molecular structure of the GARP family of plant Myb-related DNA binding motifs of the Arabidopsis response regulators | Upstream | -278 |
| | | Upstream | -279 |
| | | Upstream | -1251 |
Matrix_247 | PIF3 | Not available | Upstream | -424 |
| | | Upstream | -425 |
Matrix_250 | ADAP;AT1G79700;WRI1;ANT | Not available | Upstream | -295 |
Matrix_252 | RAP2.6 | Not available | Upstream | -125 |
| | | Upstream | -126 |
| | | Upstream | -146 |
Matrix_261 | ATERF-1 | Not available | Upstream | -17 |
| | | Upstream | -147 |
Matrix_264 | ATAREB1 | Not available | Upstream | -421 |
| | | Upstream | -422 |
| | | Upstream | -425 |
Matrix_266 | TCP16 | Determinants of the DNA binding specificity of class I and class II TCP transcription factors | Upstream | -539 |
| | | Upstream | -540 |
Matrix_272 | DEAR4 | Not available | Upstream | -125 |
| | | Upstream | -126 |
| | | Upstream | -146 |
Matrix_278 | AtbZIP44 | Not available | Upstream | -552 |
| | | Upstream | -553 |
Matrix_279 | HRS1 | Not available | Upstream | -29 |
Matrix_280 | TCP24;TCP1;BRC2;ATTCP18 | Not available | Upstream | -158 |
| | | Upstream | -538 |
| | | Upstream | -539 |
Matrix_281 | TCP13 | Not available | Upstream | -539 |
| | | Upstream | -540 |
| | | Upstream | -541 |
| | | Upstream | -542 |
Matrix_288 | RAP2.3 | Not available | Upstream | -147 |
Matrix_294 | MEE35 | Not available | Upstream | -539 |
| | | Upstream | -540 |
| | | Upstream | -541 |
| | | Upstream | -542 |
Matrix_295 | ERF1 | Not available | Upstream | -148 |
Matrix_296 | GBF2 | Not available | Upstream | -424 |
| | | Upstream | -425 |
| | | Upstream | -426 |
Matrix_297 | TCP15 | Not available | Upstream | -538 |
| | | Upstream | -539 |
| | | Upstream | -540 |
| | | Upstream | -541 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -424 |
| | | Upstream | -425 |
| | | Upstream | -426 |
Matrix_301 | PIL5 | Not available | Upstream | -426 |
Matrix_305 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -380 |
| | | Upstream | -381 |
Matrix_306 | TGA1 | TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG | Upstream | -550 |
| | | Upstream | -551 |
Matrix_324 | AT2G01060 | Not available | Upstream | -28 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -126 |
| | | Upstream | -127 |
| | | Upstream | -147 |
Matrix_331 | GBF1 | Not available | Upstream | -423 |
| | | Upstream | -424 |
Matrix_332 | SPT;ALC | Not available | Upstream | -288 |
| | | Upstream | -289 |
| | | Upstream | -424 |
| | | Upstream | -425 |
Matrix_333 | GATA3 | Not available | Upstream | -1252 |
Matrix_335 | HSFB2A | Not available | Upstream | -299 |
Matrix_338 | AP2 | Not available | Upstream | -422 |
Matrix_339 | bHLH104 | Not available | Upstream | -424 |
Matrix_343 | AT2G33710 | Not available | Upstream | -125 |
| | | Upstream | -126 |
| | | Upstream | -146 |
| | | Upstream | -149 |
Matrix_345 | POC1 | Not available | Upstream | -421 |
| | | Upstream | -541 |
| | | Upstream | -542 |
Matrix_348 | AT5G51910 | Not available | Upstream | -539 |
| | | Upstream | -540 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -126 |
| | | Upstream | -127 |
| | | Upstream | -147 |
Matrix_356 | PRR5 | Not available | Upstream | -418 |
| | | Upstream | -422 |
Matrix_360 | ORA59 | Not available | Upstream | -148 |
Matrix_361 | AT1G25550 | Not available | Upstream | -28 |
Matrix_363 | RAP2.3 | Not available | Upstream | -147 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -147 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -126 |
Matrix_378 | ATERF1 | Not available | Upstream | -125 |
| | | Upstream | -126 |
| | | Upstream | -146 |
Matrix_380 | ATMYR1 | Not available | Upstream | -29 |
| | | Upstream | -30 |
Matrix_389 | ILR3 | Not available | Upstream | -424 |
| | | Upstream | -425 |
Matrix_396 | AP3 | Not available | Upstream | -208 |
| | | Upstream | -520 |
| | | Upstream | -521 |
Matrix_399 | TGA1 | Not available | Upstream | -551 |
| | | Upstream | -552 |
Matrix_40 | TCP2 | Not available | Upstream | -539 |
| | | Upstream | -540 |
Matrix_401 | MYB55 | Not available | Upstream | -533 |
Matrix_403 | BZR1 | Not available | Upstream | -423 |
| | | Upstream | -542 |
| | | Upstream | -543 |
Matrix_406 | ATERF-7 | Not available | Upstream | -148 |
Matrix_409 | DEAR3 | Not available | Upstream | -126 |
Matrix_42 | AT2G45680 | Not available | Upstream | -539 |
| | | Upstream | -540 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -126 |
| | | Upstream | -127 |
| | | Upstream | -147 |
Matrix_438 | AtbZIP63 | Not available | Upstream | -551 |
| | | Upstream | -552 |
Matrix_443 | AGL15 | Not available | Upstream | -423 |
Matrix_45 | DRN | Not available | Upstream | -148 |
Matrix_456 | bZIP60 | Not available | Upstream | -553 |
| | | Upstream | -554 |
Matrix_457 | TGA2 | Not available | Upstream | -551 |
| | | Upstream | -552 |
Matrix_462 | ATERF-8 | Not available | Upstream | -148 |
Matrix_473 | RRTF1 | Not available | Upstream | -125 |
| | | Upstream | -126 |
| | | Upstream | -146 |
Matrix_475 | AT5G64220 | Not available | Upstream | -124 |
| | | Upstream | -125 |
| | | Upstream | -145 |
Matrix_480 | BES1 | Not available | Upstream | -423 |
| | | Upstream | -424 |
Matrix_484 | ATERF13 | Not available | Upstream | -148 |
Matrix_488 | ABF1 | Not available | Upstream | -417 |
Matrix_491 | AT1G68670;AT3G25790 | Not available | Upstream | -28 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -126 |
| | | Upstream | -127 |
| | | Upstream | -147 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -147 |
Matrix_507 | TCP3 | Not available | Upstream | -538 |
| | | Upstream | -539 |
| | | Upstream | -540 |
| | | Upstream | -541 |
Matrix_508 | APL;AT3G12730;AT3G24120;UNE16 | Not available | Upstream | -28 |
Matrix_517 | ERF12 | Not available | Upstream | -148 |
Matrix_53 | MYC3 | Not available | Upstream | -123 |
| | | Upstream | -124 |
| | | Upstream | -144 |
| | | Upstream | -422 |
| | | Upstream | -423 |
Matrix_55 | PIF3 | Not available | Upstream | -424 |
Matrix_56 | BZIP17;BZIP28;BZIP49 | Not available | Upstream | -552 |
| | | Upstream | -553 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -126 |
| | | Upstream | -127 |
| | | Upstream | -147 |
| | | Upstream | -150 |
Matrix_60 | AT1G01260;AT5G57150 | Not available | Upstream | -425 |
Matrix_65 | POC1;PIL1 | Not available | Upstream | -425 |
Matrix_69 | AT2G03500 | Not available | Upstream | -28 |
Matrix_7 | PIF4 | Not available | Upstream | -424 |
| | | Upstream | -425 |
| | | Upstream | -426 |
| | | Upstream | -427 |
Matrix_77 | PRR5 | Not available | Upstream | -121 |
| | | Upstream | -141 |
| | | Upstream | -424 |
| | | Upstream | -584 |
Matrix_80 | BIM1 | Not available | Upstream | -121 |
| | | Upstream | -140 |
| | | Upstream | -141 |
Matrix_82 | TCP17 | Not available | Upstream | -539 |
| | | Upstream | -540 |
| | | Upstream | -541 |
| | | Upstream | -542 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -126 |
| | | Upstream | -127 |
| | | Upstream | -147 |
Matrix_91 | CRF3 | Not available | Upstream | -126 |
Matrix_94 | TCP5 | Not available | Upstream | -539 |
| | | Upstream | -541 |
Matrix_97 | APRR2 | Not available | Upstream | -28 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Upstream | -488 |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Upstream | -414 |
Motif_141 | BP5OSWX | OsBP-5 (a MYC protein) binding site in Wx promoter | Upstream | -546 |
Motif_150 | RBCSCONSENSUS | rbcS general consensus sequence; AATCCAA or AATCCAAC | Upstream | -474 |
| | | Upstream | -480 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -426 |
Motif_189 | CMSRE1IBSPOA | CMSRE-1 (Carbohydrate Metabolite Signal Responsive Element 1) found in the promoter of sweet potato sporamin A gene | Upstream | -19 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -426 |
Motif_200 | GBOXLERBCS | G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF | Upstream | -424 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -104 |
| | | Upstream | -123 |
| | | Upstream | -143 |
| | | Upstream | -425 |
| | | Upstream | -426 |
| | | Upstream | -545 |
| | | Upstream | -602 |
| | | Upstream | -603 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Upstream | -182 |
| | | Upstream | -260 |
Motif_223 | LTRE1HVBLT49 | LTRE-1 (low-temperature-responsive element) in barley (H.v.) blt4.9 gene promoter; A new LTRE; A previously known LTRE is CCGAC | Upstream | -374 |
Motif_24 | CAMTA3 | Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing tolerance | Upstream | -602 |
Motif_243 | TELOBOXATEEF1AA1 | telo-box (telomere motif) found in the Arabidopsis (A.t.) eEF1AA1 gene promoter; Conserved in all known plant eEF1A gene promoters; Found in the 5' region of numerous genes encoding components of the translational apparatus; Required for the activation of expression in root primordia; Acts co-operatively with tef-box; Binding site of AtPur alpha-1; Plant interstitial telomere mitifs participate in the control of gene expression in root meristems | Upstream | -208 |
| | | Upstream | -521 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -424 |
| | | Upstream | -426 |
| | | Upstream | -555 |
Motif_249 | DPBF1&2 binding site motif | A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system | Upstream | -426 |
| | | Upstream | -604 |
Motif_291 | ABFs binding site motif | Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element | Upstream | -424 |
Motif_310 | ANAERO3CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO3CONSENSUS by the PLACEdb curator | Upstream | -405 |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -105 |
| | | Upstream | -124 |
| | | Upstream | -144 |
| | | Upstream | -603 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -426 |
| | | Upstream | -555 |
Motif_346 | SND1;VND6;VND7;NST1;NST2 | Global analysis of direct targets of secondary wall NAC master switches in Arabidopsis | Upstream | -235 |
Motif_347 | OPAQUE2ZMB32 | opaque-2 binding site of maize b-32 (type I ribosome-inactivating protein gene); O2; O2S; O2S and GARE form a gibberellin response complex (GARC) | Upstream | -552 |
Motif_353 | HEXAMERATH4 | hexamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 gene | Upstream | -345 |
Motif_358 | UP2ATMSD | Up2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis | Upstream | -209 |
| | | Upstream | -522 |
Motif_371 | DRE-like promoter motif | The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses | Upstream | -67 |
| | | Upstream | -343 |
Motif_383 | UPRE-III(bZIP60) | The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in Arabidopsis | Upstream | -277 |
Motif_392 | PALBOXAPC | Box A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box L | Upstream | -19 |
| | | Upstream | -369 |
Motif_399 | UPRMOTIFIAT | Motif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc. | Upstream | -554 |
Motif_411 | PRECONSCRHSP70A | Consensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and light | Upstream | -344 |
Motif_440 | TGA1 binding site motif | Hex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG | Upstream | -554 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -425 |
Motif_450 | E2FCONSENSUS | E2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plants | Upstream | -107 |
Motif_453 | HEXMOTIFTAH3H4 | hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding site | Upstream | -554 |
Motif_48 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -587 |
Motif_542 | ABI5;AtMYC2;HY5 | A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth. Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis | Upstream | -424 |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -424 |
Motif_567 | T/GBOXATPIN2 | T/G-box found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognize this motif | Upstream | -546 |
Motif_57 | ABREOSRAB21 | ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em gene | Upstream | -543 |
Motif_576 | TGACGTVMAMY | TGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seeds | Upstream | -554 |
Motif_580 | L1BOXATPDF1 | L1 box found in promoter of Arabidopsis thaliana PROTODERMAL FACTOR1 (PDF1) gene; Located between -134 and -127; Involved in L1 layer-specific expression; L1-specific homeodomain protein ATML can bind to the L1 box; Y=C/T; A cotton fiber gene, RD22-like 1 (RDL1), contains a homeodomain binding L1 box and a MYB binding motif ; HDZip IV; Identification of a cis-regulatory element for L1 layer-specific gene expression, which is targeted by an L1-specific homeodomain protein | Upstream | -516 |
Motif_584 | UPRE-III(bZIP60) | The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in Arabidopsis | Upstream | -277 |
Motif_591 | CBFHV | Binding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs) | Upstream | -356 |
| | | Upstream | -609 |
Motif_603 | SITEIIATCYTC | Site II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and rice | Upstream | -540 |
| | | Upstream | -542 |
Motif_606 | NAPINMOTIFBN | Sequence found in 5' upstream region (-6, -95, -188) of napin (2S albumin) gene in Brassica napus; Interact with a protein present in crude nuclear extracts from developing B. napus seeds | Downstream | 2217 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -424 |
| | | Upstream | -427 |
Motif_630 | WBOXNTCHN48 | W box identified in the region between -125 and -69 of a tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and NtWRKY4 bound to W box; NtWRKYs possibly involved in elicitor-respsonsive transcription of defense genes in tobacco | Upstream | -83 |
| | | Upstream | -381 |
Motif_638 | ABRE binding site motif | Not available | Upstream | -424 |
Motif_641 | LRENPCABE | LRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241 | Upstream | -423 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -598 |
Motif_72 | GADOWNAT | Sequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABRE | Upstream | -427 |
Motif_79 | UPRMOTIFIIAT | Motif II in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc | Upstream | -386 |
Motif_92 | ABREATRD22 | ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22 | Upstream | -423 |
Motif_95 | UPRE2AT | XBP1 binding site-like sequence found in the plant UPRE (unfolded protein response element) in Arabidopsis thaliana;Either of ERSEII or XBP1 binding sites is essential and sufficient for the UPR | Upstream | -552 |