Matrix_101 | ERF5 | Not available | Upstream | -1612 |
Matrix_109 | GBF3 | Not available | Upstream | -470 |
| | | Upstream | -475 |
| | | Upstream | -480 |
Matrix_119 | RRTF1 | Not available | Upstream | -1613 |
| | | Upstream | -1614 |
Matrix_138 | RRTF1 | Not available | Upstream | -1613 |
| | | Upstream | -1614 |
Matrix_146 | ORA47 | Not available | Upstream | -1612 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -1614 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -1613 |
Matrix_206 | CUC1;ANAC100 | Not available | Upstream | -468 |
| | | Upstream | -473 |
| | | Upstream | -478 |
Matrix_224 | ERF1 | Not available | Downstream | 1378 |
| | | Upstream | -1613 |
Matrix_23 | ANAC46 | Not available | Upstream | -469 |
| | | Upstream | -474 |
| | | Upstream | -479 |
Matrix_234 | RAP2.3 | Not available | Upstream | -1612 |
Matrix_24 | POC1 | Not available | Upstream | -1033 |
Matrix_25 | AP3 | Not available | Upstream | -408 |
Matrix_252 | RAP2.6 | Not available | Upstream | -1612 |
Matrix_256 | IXR11;KNAT5;KNAT4;KNAT3 | Not available | Upstream | -1033 |
| | | Upstream | -1034 |
Matrix_257 | NAC050;ANAC051;anac057;NAC2 | Not available | Upstream | -468 |
| | | Upstream | -473 |
| | | Upstream | -478 |
Matrix_261 | ATERF-1 | Not available | Upstream | -1613 |
| | | Upstream | -1614 |
Matrix_287 | ERF2 | Not available | Upstream | -1612 |
Matrix_288 | RAP2.3 | Not available | Upstream | -1613 |
| | | Upstream | -1614 |
Matrix_295 | ERF1 | Not available | Upstream | -1614 |
| | | Upstream | -1615 |
Matrix_322 | NST3;ANAC015;BRN2 | Not available | Upstream | -1037 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -1613 |
| | | Upstream | -1614 |
Matrix_334 | AT3G23230 | Not available | Upstream | -1613 |
Matrix_343 | AT2G33710 | Not available | Upstream | -1612 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -1613 |
| | | Upstream | -1614 |
Matrix_360 | ORA59 | Not available | Upstream | -1614 |
Matrix_363 | RAP2.3 | Not available | Upstream | -1613 |
| | | Upstream | -1614 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -1613 |
Matrix_378 | ATERF1 | Not available | Upstream | -1612 |
| | | Upstream | -1613 |
Matrix_385 | DEAR4 | Not available | Downstream | 1381 |
Matrix_406 | ATERF-7 | Not available | Upstream | -1614 |
Matrix_409 | DEAR3 | Not available | Upstream | -1613 |
Matrix_420 | ANAC58 | Not available | Upstream | -469 |
| | | Upstream | -474 |
| | | Upstream | -479 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -1613 |
| | | Upstream | -1614 |
Matrix_438 | AtbZIP63 | Not available | Upstream | -472 |
| | | Upstream | -477 |
Matrix_44 | CUC3;anac046;NAC3;ANAC087;ATNAC6;CUC2 | Not available | Upstream | -469 |
| | | Upstream | -474 |
| | | Upstream | -479 |
Matrix_45 | DRN | Not available | Upstream | -1614 |
| | | Upstream | -1615 |
Matrix_462 | ATERF-8 | Not available | Upstream | -1614 |
Matrix_473 | RRTF1 | Not available | Upstream | -1612 |
Matrix_484 | ATERF13 | Not available | Upstream | -1614 |
| | | Upstream | -1615 |
Matrix_488 | ABF1 | Not available | Upstream | -468 |
| | | Upstream | -473 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -1613 |
Matrix_5 | AT5G51190;ERF104 | Not available | Downstream | 1377 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -1613 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -1613 |
Matrix_517 | ERF12 | Not available | Upstream | -1614 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -1613 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -1613 |
| | | Upstream | -1614 |
Matrix_91 | CRF3 | Not available | Upstream | -1613 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Upstream | -1629 |
Motif_136 | SEF4MOTIFGM7S | SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4) | Upstream | -582 |
Motif_155 | NODCON1GM | One of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodules | Upstream | -178 |
Motif_223 | LTRE1HVBLT49 | LTRE-1 (low-temperature-responsive element) in barley (H.v.) blt4.9 gene promoter; A new LTRE; A previously known LTRE is CCGAC | Upstream | -564 |
| | | Upstream | -604 |
Motif_261 | S1FBOXSORPS1L21 | S1F box conserved both in spinach RPS1 and RPL21 genes encoding the plastid ribosomal protein S1 and L21, respectively; Negative element; Might play a role in downregulating RPS1 and RPL21 promoter activity | Upstream | -182 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -1615 |
Motif_348 | WBBOXPCWRKY1 | WB box; WRKY proteins bind specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box; Found in amylase gene in sweet potato, alpha-Amy2 genes in wheat, barley, and wild oat, PR1 gene in parsley, and a transcription factor gene in Arabidopsis | Upstream | -1078 |
Motif_411 | PRECONSCRHSP70A | Consensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and light | Upstream | -1018 |
Motif_450 | E2FCONSENSUS | E2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plants | Upstream | -1611 |
Motif_530 | CPBCSPOR | The sequence critical for Cytokinin-enhanced Protein Binding in vitro, found in -490 to -340 of the promoter of the cucumber POR (NADPH-protochlorophyllide reductase) gene | Upstream | -1063 |
Motif_563 | PYRIMIDINEBOXOSRAMY1A | Pyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this site | Upstream | -84 |
| | | Upstream | -94 |
| | | Upstream | -641 |
| | | Upstream | -695 |
Motif_603 | SITEIIATCYTC | Site II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and rice | Upstream | -1045 |
Motif_615 | MARTBOX | T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR) | Upstream | -736 |
Motif_630 | WBOXNTCHN48 | W box identified in the region between -125 and -69 of a tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and NtWRKY4 bound to W box; NtWRKYs possibly involved in elicitor-respsonsive transcription of defense genes in tobacco | Upstream | -1074 |
Motif_649 | 2SSEEDPROTBANAPA | Conserved in many storage-protein gene promoters; May be important for high activity of the napA promoter | Upstream | -884 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -405 |
Motif_70 | CANBNNAPA | Core of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressor | Upstream | -1020 |