View conserved binding sites


Gene
GM14G29040
Description
Pathogenesis-related genes transcriptional activator PTI6
Alias
Glyma14g29040;Glyma14g29040.2;PAC:26287170;Glyma14g29040.2
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-1612
Matrix_109GBF3Not availableUpstream-470
Upstream-475
Upstream-480
Matrix_119RRTF1Not availableUpstream-1613
Upstream-1614
Matrix_138RRTF1Not availableUpstream-1613
Upstream-1614
Matrix_146ORA47Not availableUpstream-1612
Matrix_147ERF3;AT1G80580Not availableUpstream-1614
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-1613
Matrix_206CUC1;ANAC100Not availableUpstream-468
Upstream-473
Upstream-478
Matrix_224ERF1Not availableDownstream1378
Upstream-1613
Matrix_23ANAC46Not availableUpstream-469
Upstream-474
Upstream-479
Matrix_234RAP2.3Not availableUpstream-1612
Matrix_24POC1Not availableUpstream-1033
Matrix_25AP3Not availableUpstream-408
Matrix_252RAP2.6Not availableUpstream-1612
Matrix_256IXR11;KNAT5;KNAT4;KNAT3Not availableUpstream-1033
Upstream-1034
Matrix_257NAC050;ANAC051;anac057;NAC2Not availableUpstream-468
Upstream-473
Upstream-478
Matrix_261ATERF-1Not availableUpstream-1613
Upstream-1614
Matrix_287ERF2Not availableUpstream-1612
Matrix_288RAP2.3Not availableUpstream-1613
Upstream-1614
Matrix_295ERF1Not availableUpstream-1614
Upstream-1615
Matrix_322NST3;ANAC015;BRN2Not availableUpstream-1037
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-1613
Upstream-1614
Matrix_334AT3G23230Not availableUpstream-1613
Matrix_343AT2G33710Not availableUpstream-1612
Matrix_355ERF10;ERF11Not availableUpstream-1613
Upstream-1614
Matrix_360ORA59Not availableUpstream-1614
Matrix_363RAP2.3Not availableUpstream-1613
Upstream-1614
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-1613
Matrix_378ATERF1Not availableUpstream-1612
Upstream-1613
Matrix_385DEAR4Not availableDownstream1381
Matrix_406ATERF-7Not availableUpstream-1614
Matrix_409DEAR3Not availableUpstream-1613
Matrix_420ANAC58Not availableUpstream-469
Upstream-474
Upstream-479
Matrix_426CRF1;CRF2Not availableUpstream-1613
Upstream-1614
Matrix_438AtbZIP63Not availableUpstream-472
Upstream-477
Matrix_44CUC3;anac046;NAC3;ANAC087;ATNAC6;CUC2Not availableUpstream-469
Upstream-474
Upstream-479
Matrix_45DRNNot availableUpstream-1614
Upstream-1615
Matrix_462ATERF-8Not availableUpstream-1614
Matrix_473RRTF1Not availableUpstream-1612
Matrix_484ATERF13Not availableUpstream-1614
Upstream-1615
Matrix_488ABF1Not availableUpstream-468
Upstream-473
Matrix_493AT1G22985;AT1G71130Not availableUpstream-1613
Matrix_5AT5G51190;ERF104Not availableDownstream1377
Matrix_50ATERF14;AT5G43410Not availableUpstream-1613
Matrix_506DRNL;ATERF-4Not availableUpstream-1613
Matrix_517ERF12Not availableUpstream-1614
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-1613
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-1613
Upstream-1614
Matrix_91CRF3Not availableUpstream-1613
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-1629
Motif_136SEF4MOTIFGM7SSEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)Upstream-582
Motif_155NODCON1GMOne of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodulesUpstream-178
Motif_223LTRE1HVBLT49LTRE-1 (low-temperature-responsive element) in barley (H.v.) blt4.9 gene promoter; A new LTRE; A previously known LTRE is CCGACUpstream-564
Upstream-604
Motif_261S1FBOXSORPS1L21S1F box conserved both in spinach RPS1 and RPL21 genes encoding the plastid ribosomal protein S1 and L21, respectively; Negative element; Might play a role in downregulating RPS1 and RPL21 promoter activityUpstream-182
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-1615
Motif_348WBBOXPCWRKY1WB box; WRKY proteins bind specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box; Found in amylase gene in sweet potato, alpha-Amy2 genes in wheat, barley, and wild oat, PR1 gene in parsley, and a transcription factor gene in ArabidopsisUpstream-1078
Motif_411PRECONSCRHSP70AConsensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and lightUpstream-1018
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsUpstream-1611
Motif_530CPBCSPORThe sequence critical for Cytokinin-enhanced Protein Binding in vitro, found in -490 to -340 of the promoter of the cucumber POR (NADPH-protochlorophyllide reductase) geneUpstream-1063
Motif_563PYRIMIDINEBOXOSRAMY1APyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this siteUpstream-84
Upstream-94
Upstream-641
Upstream-695
Motif_603SITEIIATCYTCSite II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and riceUpstream-1045
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Upstream-736
Motif_630WBOXNTCHN48W box identified in the region between -125 and -69 of a tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and NtWRKY4 bound to W box; NtWRKYs possibly involved in elicitor-respsonsive transcription of defense genes in tobaccoUpstream-1074
Motif_6492SSEEDPROTBANAPAConserved in many storage-protein gene promoters; May be important for high activity of the napA promoterUpstream-884
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-405
Motif_70CANBNNAPACore of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressorUpstream-1020