Matrix_101 | ERF5 | Not available | Upstream | -1631 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -1057 |
Matrix_119 | RRTF1 | Not available | Upstream | -1632 |
| | | Upstream | -1633 |
Matrix_133 | DYT1 | Not available | Upstream | -1056 |
| | | Upstream | -1057 |
Matrix_138 | RRTF1 | Not available | Upstream | -1632 |
| | | Upstream | -1633 |
Matrix_146 | ORA47 | Not available | Upstream | -1631 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -1633 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -1057 |
| | | Upstream | -1058 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -1632 |
Matrix_165 | KNAT1 | Not available | Upstream | -1058 |
Matrix_189 | WRI1 | An AP2-type transcription factor, WRINKLED1, of Arabidopsis thaliana binds to the AW-box sequence conserved among proximal upstream regions of genes involved in fatty acid synthesis | Upstream | -1621 |
Matrix_224 | ERF1 | Not available | Upstream | -1632 |
Matrix_234 | RAP2.3 | Not available | Upstream | -1631 |
Matrix_24 | POC1 | Not available | Upstream | -1057 |
Matrix_252 | RAP2.6 | Not available | Upstream | -1631 |
Matrix_256 | IXR11;KNAT5;KNAT4;KNAT3 | Not available | Upstream | -1057 |
| | | Upstream | -1058 |
Matrix_261 | ATERF-1 | Not available | Upstream | -1632 |
| | | Upstream | -1633 |
Matrix_272 | DEAR4 | Not available | Upstream | -931 |
Matrix_287 | ERF2 | Not available | Upstream | -1631 |
Matrix_288 | RAP2.3 | Not available | Upstream | -1632 |
| | | Upstream | -1633 |
Matrix_295 | ERF1 | Not available | Upstream | -930 |
| | | Upstream | -1633 |
| | | Upstream | -1634 |
Matrix_301 | PIL5 | Not available | Upstream | -1056 |
| | | Upstream | -1057 |
| | | Upstream | -1062 |
| | | Upstream | -1063 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -1632 |
| | | Upstream | -1633 |
Matrix_334 | AT3G23230 | Not available | Upstream | -1632 |
Matrix_343 | AT2G33710 | Not available | Upstream | -1631 |
Matrix_345 | POC1 | Not available | Upstream | -1057 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -1632 |
| | | Upstream | -1633 |
Matrix_356 | PRR5 | Not available | Upstream | -1058 |
| | | Upstream | -1059 |
Matrix_360 | ORA59 | Not available | Upstream | -1633 |
Matrix_363 | RAP2.3 | Not available | Upstream | -1632 |
| | | Upstream | -1633 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -1632 |
Matrix_378 | ATERF1 | Not available | Upstream | -1631 |
| | | Upstream | -1632 |
Matrix_403 | BZR1 | Not available | Upstream | -1059 |
| | | Upstream | -1060 |
Matrix_406 | ATERF-7 | Not available | Upstream | -1633 |
Matrix_409 | DEAR3 | Not available | Upstream | -1632 |
Matrix_418 | KNAT6;KNAT2 | Not available | Upstream | -1057 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -1632 |
Matrix_438 | AtbZIP63 | Not available | Upstream | -1061 |
| | | Upstream | -1062 |
Matrix_449 | BIM2 | Not available | Upstream | -1061 |
| | | Upstream | -1062 |
Matrix_45 | DRN | Not available | Upstream | -930 |
| | | Upstream | -1633 |
| | | Upstream | -1634 |
Matrix_462 | ATERF-8 | Not available | Upstream | -1633 |
Matrix_473 | RRTF1 | Not available | Upstream | -1631 |
Matrix_484 | ATERF13 | Not available | Upstream | -930 |
| | | Upstream | -1633 |
| | | Upstream | -1634 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -1632 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -1632 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -1632 |
Matrix_514 | DYT1 | Regulation of the Arabidopsis anther transcriptome by DYT1 for pollen development | Upstream | -1059 |
| | | Upstream | -1060 |
Matrix_517 | ERF12 | Not available | Upstream | -1633 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -1632 |
Matrix_77 | PRR5 | Not available | Upstream | -1726 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -1632 |
Matrix_91 | CRF3 | Not available | Upstream | -1632 |
Motif_136 | SEF4MOTIFGM7S | SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4) | Upstream | -587 |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Upstream | -1062 |
| | | Upstream | -1064 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -1063 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -1063 |
| | | Upstream | -1645 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -1610 |
Motif_223 | LTRE1HVBLT49 | LTRE-1 (low-temperature-responsive element) in barley (H.v.) blt4.9 gene promoter; A new LTRE; A previously known LTRE is CCGAC | Upstream | -577 |
| | | Upstream | -607 |
Motif_286 | SEBFCONSSTPR10A | Binding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response element | Upstream | -1059 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -930 |
| | | Upstream | -1634 |
Motif_321 | TATABOX5 | TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis | Upstream | -633 |
| | | Upstream | -637 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -1063 |
Motif_342 | POLASIG1 | PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis | Upstream | -636 |
Motif_348 | WBBOXPCWRKY1 | WB box; WRKY proteins bind specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box; Found in amylase gene in sweet potato, alpha-Amy2 genes in wheat, barley, and wild oat, PR1 gene in parsley, and a transcription factor gene in Arabidopsis | Upstream | -1102 |
Motif_371 | DRE-like promoter motif | The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses | Upstream | -710 |
Motif_395 | RHE_element | Functional Conservation of a Root Hair Cell-Specific cis-Element in Angiosperms with Different Root Hair Distribution Patterns | Upstream | -1064 |
Motif_450 | E2FCONSENSUS | E2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plants | Upstream | -1630 |
Motif_48 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -284 |
Motif_567 | T/GBOXATPIN2 | T/G-box found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognize this motif | Upstream | -1610 |
Motif_603 | SITEIIATCYTC | Site II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and rice | Upstream | -1069 |
Motif_615 | MARTBOX | T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR) | Upstream | -395 |
Motif_630 | WBOXNTCHN48 | W box identified in the region between -125 and -69 of a tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and NtWRKY4 bound to W box; NtWRKYs possibly involved in elicitor-respsonsive transcription of defense genes in tobacco | Upstream | -1098 |
Motif_70 | CANBNNAPA | Core of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressor | Upstream | -1044 |