View conserved binding sites


Gene
GM13G08490
Description
Pathogenesis-related genes transcriptional activator PTI6
Alias
Glyma13g08490;Glyma13g08490.1;PAC:26316853;Glyma13g08490.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-1631
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-1057
Matrix_119RRTF1Not availableUpstream-1632
Upstream-1633
Matrix_133DYT1Not availableUpstream-1056
Upstream-1057
Matrix_138RRTF1Not availableUpstream-1632
Upstream-1633
Matrix_146ORA47Not availableUpstream-1631
Matrix_147ERF3;AT1G80580Not availableUpstream-1633
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-1057
Upstream-1058
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-1632
Matrix_165KNAT1Not availableUpstream-1058
Matrix_189WRI1An AP2-type transcription factor, WRINKLED1, of Arabidopsis thaliana binds to the AW-box sequence conserved among proximal upstream regions of genes involved in fatty acid synthesisUpstream-1621
Matrix_224ERF1Not availableUpstream-1632
Matrix_234RAP2.3Not availableUpstream-1631
Matrix_24POC1Not availableUpstream-1057
Matrix_252RAP2.6Not availableUpstream-1631
Matrix_256IXR11;KNAT5;KNAT4;KNAT3Not availableUpstream-1057
Upstream-1058
Matrix_261ATERF-1Not availableUpstream-1632
Upstream-1633
Matrix_272DEAR4Not availableUpstream-931
Matrix_287ERF2Not availableUpstream-1631
Matrix_288RAP2.3Not availableUpstream-1632
Upstream-1633
Matrix_295ERF1Not availableUpstream-930
Upstream-1633
Upstream-1634
Matrix_301PIL5Not availableUpstream-1056
Upstream-1057
Upstream-1062
Upstream-1063
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-1632
Upstream-1633
Matrix_334AT3G23230Not availableUpstream-1632
Matrix_343AT2G33710Not availableUpstream-1631
Matrix_345POC1Not availableUpstream-1057
Matrix_355ERF10;ERF11Not availableUpstream-1632
Upstream-1633
Matrix_356PRR5Not availableUpstream-1058
Upstream-1059
Matrix_360ORA59Not availableUpstream-1633
Matrix_363RAP2.3Not availableUpstream-1632
Upstream-1633
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-1632
Matrix_378ATERF1Not availableUpstream-1631
Upstream-1632
Matrix_403BZR1Not availableUpstream-1059
Upstream-1060
Matrix_406ATERF-7Not availableUpstream-1633
Matrix_409DEAR3Not availableUpstream-1632
Matrix_418KNAT6;KNAT2Not availableUpstream-1057
Matrix_426CRF1;CRF2Not availableUpstream-1632
Matrix_438AtbZIP63Not availableUpstream-1061
Upstream-1062
Matrix_449BIM2Not availableUpstream-1061
Upstream-1062
Matrix_45DRNNot availableUpstream-930
Upstream-1633
Upstream-1634
Matrix_462ATERF-8Not availableUpstream-1633
Matrix_473RRTF1Not availableUpstream-1631
Matrix_484ATERF13Not availableUpstream-930
Upstream-1633
Upstream-1634
Matrix_493AT1G22985;AT1G71130Not availableUpstream-1632
Matrix_50ATERF14;AT5G43410Not availableUpstream-1632
Matrix_506DRNL;ATERF-4Not availableUpstream-1632
Matrix_514DYT1Regulation of the Arabidopsis anther transcriptome by DYT1 for pollen developmentUpstream-1059
Upstream-1060
Matrix_517ERF12Not availableUpstream-1633
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-1632
Matrix_77PRR5Not availableUpstream-1726
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-1632
Matrix_91CRF3Not availableUpstream-1632
Motif_136SEF4MOTIFGM7SSEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)Upstream-587
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-1062
Upstream-1064
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-1063
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-1063
Upstream-1645
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-1610
Motif_223LTRE1HVBLT49LTRE-1 (low-temperature-responsive element) in barley (H.v.) blt4.9 gene promoter; A new LTRE; A previously known LTRE is CCGACUpstream-577
Upstream-607
Motif_286SEBFCONSSTPR10ABinding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response elementUpstream-1059
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-930
Upstream-1634
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisUpstream-633
Upstream-637
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-1063
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisUpstream-636
Motif_348WBBOXPCWRKY1WB box; WRKY proteins bind specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box; Found in amylase gene in sweet potato, alpha-Amy2 genes in wheat, barley, and wild oat, PR1 gene in parsley, and a transcription factor gene in ArabidopsisUpstream-1102
Motif_371DRE-like promoter motifThe Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental StressesUpstream-710
Motif_395RHE_elementFunctional Conservation of a Root Hair Cell-Specific cis-Element in Angiosperms with Different Root Hair Distribution PatternsUpstream-1064
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsUpstream-1630
Motif_48BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-284
Motif_567T/GBOXATPIN2T/G-box found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognize this motifUpstream-1610
Motif_603SITEIIATCYTCSite II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and riceUpstream-1069
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Upstream-395
Motif_630WBOXNTCHN48W box identified in the region between -125 and -69 of a tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and NtWRKY4 bound to W box; NtWRKYs possibly involved in elicitor-respsonsive transcription of defense genes in tobaccoUpstream-1098
Motif_70CANBNNAPACore of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressorUpstream-1044