Matrix_101 | ERF5 | Not available | Upstream | -722 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -719 |
Matrix_14 | ZCW32;AT5G62610 | Not available | Upstream | -800 |
Matrix_146 | ORA47 | Not available | Upstream | -722 |
Matrix_179 | AtMYB84;MYB36;MYB68;O49746_ARATH | Not available | Upstream | -82 |
Matrix_190 | ATERF1 | Not available | Upstream | -719 |
| | | Upstream | -721 |
| | | Upstream | -722 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -793 |
Matrix_224 | ERF1 | Not available | Upstream | -723 |
Matrix_234 | RAP2.3 | Not available | Upstream | -722 |
Matrix_252 | RAP2.6 | Not available | Upstream | -719 |
| | | Upstream | -722 |
Matrix_260 | CAMTA3 | Not available | Upstream | -798 |
Matrix_261 | ATERF-1 | Not available | Upstream | -723 |
Matrix_272 | DEAR4 | Not available | Upstream | -722 |
Matrix_287 | ERF2 | Not available | Upstream | -722 |
Matrix_295 | ERF1 | Not available | Upstream | -724 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -723 |
Matrix_332 | SPT;ALC | Not available | Upstream | -800 |
Matrix_334 | AT3G23230 | Not available | Upstream | -723 |
Matrix_343 | AT2G33710 | Not available | Upstream | -722 |
Matrix_363 | RAP2.3 | Not available | Upstream | -723 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -720 |
| | | Upstream | -723 |
Matrix_405 | DREB2C | Not available | Upstream | -721 |
Matrix_406 | ATERF-7 | Not available | Upstream | -724 |
Matrix_409 | DEAR3 | Not available | Upstream | -723 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -723 |
Matrix_463 | HAT3.1 | Not available | Upstream | -76 |
Matrix_48 | PI | Not available | Upstream | -679 |
Matrix_484 | ATERF13 | Not available | Upstream | -724 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -723 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -723 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -723 |
Matrix_517 | ERF12 | Not available | Upstream | -724 |
Matrix_80 | BIM1 | Not available | Upstream | -797 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -723 |
Matrix_91 | CRF3 | Not available | Upstream | -723 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -800 |
Motif_292 | MYBPZM | Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes | Upstream | -90 |
Motif_305 | SP1SV40 | SP-1 binding site (GC box) in enhancer regions of SV40 and human metallothionein IIA (hMT IIA) | Upstream | -725 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -724 |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -801 |
Motif_329 | AMMORESIIUDCRNIA1 | Motifs (IIU and IID) found in the Chlamydomonas Nia1 gene promoter; Involved in ammonium-response; Located between -231 and -219 and also between -76 and -65; Involved in Nia1 transcription activation | Upstream | -686 |
Motif_453 | HEXMOTIFTAH3H4 | hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding site | Upstream | -697 |
Motif_489 | SORLREP3AT | one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and also all SORLIPs;Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Upstream | -97 |
Motif_552 | MRE1 | MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1 | Upstream | -49 |
| | | Upstream | -52 |
Motif_576 | TGACGTVMAMY | TGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seeds | Upstream | -697 |
Motif_615 | MARTBOX | T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR) | Downstream | 707 |
| | | Downstream | 706 |
| | | Downstream | 705 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -794 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -38 |
| | | Upstream | -40 |
| | | Upstream | -42 |