View conserved binding sites


Gene
GM12G13315
Description
Ethylene-responsive transcription factor
Alias
Glyma12g13315;Glyma12g13315.1;PAC:26291823;Glyma12g13315.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-722
Matrix_110ATABI4;AT3G57600Not availableUpstream-719
Matrix_14ZCW32;AT5G62610Not availableUpstream-800
Matrix_146ORA47Not availableUpstream-722
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableUpstream-82
Matrix_190ATERF1Not availableUpstream-719
Upstream-721
Upstream-722
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-793
Matrix_224ERF1Not availableUpstream-723
Matrix_234RAP2.3Not availableUpstream-722
Matrix_252RAP2.6Not availableUpstream-719
Upstream-722
Matrix_260CAMTA3Not availableUpstream-798
Matrix_261ATERF-1Not availableUpstream-723
Matrix_272DEAR4Not availableUpstream-722
Matrix_287ERF2Not availableUpstream-722
Matrix_295ERF1Not availableUpstream-724
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-723
Matrix_332SPT;ALCNot availableUpstream-800
Matrix_334AT3G23230Not availableUpstream-723
Matrix_343AT2G33710Not availableUpstream-722
Matrix_363RAP2.3Not availableUpstream-723
Matrix_374AT5G07580;AT5G61590Not availableUpstream-720
Upstream-723
Matrix_405DREB2CNot availableUpstream-721
Matrix_406ATERF-7Not availableUpstream-724
Matrix_409DEAR3Not availableUpstream-723
Matrix_426CRF1;CRF2Not availableUpstream-723
Matrix_463HAT3.1Not availableUpstream-76
Matrix_48PINot availableUpstream-679
Matrix_484ATERF13Not availableUpstream-724
Matrix_493AT1G22985;AT1G71130Not availableUpstream-723
Matrix_50ATERF14;AT5G43410Not availableUpstream-723
Matrix_506DRNL;ATERF-4Not availableUpstream-723
Matrix_517ERF12Not availableUpstream-724
Matrix_80BIM1Not availableUpstream-797
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-723
Matrix_91CRF3Not availableUpstream-723
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-800
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-90
Motif_305SP1SV40SP-1 binding site (GC box) in enhancer regions of SV40 and human metallothionein IIA (hMT IIA)Upstream-725
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-724
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-801
Motif_329AMMORESIIUDCRNIA1Motifs (IIU and IID) found in the Chlamydomonas Nia1 gene promoter; Involved in ammonium-response; Located between -231 and -219 and also between -76 and -65; Involved in Nia1 transcription activationUpstream-686
Motif_453HEXMOTIFTAH3H4hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding siteUpstream-697
Motif_489SORLREP3ATone of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and also all SORLIPs;Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-97
Motif_552MRE1MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1Upstream-49
Upstream-52
Motif_576TGACGTVMAMYTGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seedsUpstream-697
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Downstream707
Downstream706
Downstream705
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-794
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-38
Upstream-40
Upstream-42