Matrix_104 | PI | Not available | Upstream | -602 |
Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -602 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -599 |
| | | Upstream | -600 |
Matrix_120 | BEE2 | Not available | Upstream | -603 |
Matrix_130 | TCP16 | Not available | Upstream | -500 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -604 |
Matrix_156 | POC1 | Not available | Upstream | -602 |
| | | Upstream | -604 |
Matrix_186 | FHY3 | Not available | Upstream | -370 |
Matrix_19 | PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling | Upstream | -600 |
| | | Upstream | -603 |
Matrix_196 | TCP20;AT5G41030 | Not available | Upstream | -509 |
| | | Upstream | -599 |
| | | Upstream | -600 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Upstream | -603 |
Matrix_214 | AP1 | Not available | Upstream | -601 |
Matrix_215 | ARF1 | ARF1, a transcription factor that binds to auxin response elements | Upstream | -454 |
| | | Upstream | -455 |
Matrix_216 | TCP16 | Not available | Upstream | -345 |
| | | Upstream | -500 |
Matrix_233 | MYC3 | Not available | Upstream | -604 |
Matrix_24 | POC1 | Not available | Upstream | -455 |
Matrix_247 | PIF3 | Not available | Upstream | -603 |
Matrix_266 | TCP16 | Determinants of the DNA binding specificity of class I and class II TCP transcription factors | Upstream | -345 |
| | | Upstream | -500 |
Matrix_294 | MEE35 | Not available | Upstream | -502 |
| | | Upstream | -598 |
Matrix_301 | PIL5 | Not available | Upstream | -598 |
Matrix_305 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -601 |
Matrix_338 | AP2 | Not available | Upstream | -600 |
Matrix_345 | POC1 | Not available | Upstream | -599 |
| | | Upstream | -600 |
Matrix_348 | AT5G51910 | Not available | Upstream | -344 |
| | | Upstream | -345 |
| | | Upstream | -500 |
| | | Upstream | -598 |
Matrix_40 | TCP2 | Not available | Upstream | -500 |
| | | Upstream | -598 |
Matrix_403 | BZR1 | Not available | Upstream | -565 |
| | | Upstream | -601 |
Matrix_42 | AT2G45680 | Not available | Upstream | -345 |
| | | Upstream | -500 |
| | | Upstream | -598 |
Matrix_53 | MYC3 | Not available | Upstream | -600 |
| | | Upstream | -601 |
Matrix_64 | PIF5 | Not available | Upstream | -604 |
Matrix_65 | POC1;PIL1 | Not available | Upstream | -603 |
Matrix_7 | PIF4 | Not available | Upstream | -602 |
Matrix_77 | PRR5 | Not available | Upstream | -370 |
Matrix_82 | TCP17 | Not available | Upstream | -502 |
| | | Upstream | -598 |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Upstream | -567 |
Motif_145 | MYCATERD1 | MYC recognition sequence (from -466 to -461) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis; NAC protein bound specifically to the CATGTG motif; NAC protein bound specifically to the CATGTG motif | Upstream | -583 |
| | | Upstream | -636 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -604 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -604 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -372 |
| | | Upstream | -436 |
| | | Upstream | -603 |
| | | Upstream | -604 |
| | | Upstream | -851 |
Motif_256 | RHE_element | Functional Conservation of a Root Hair Cell-Specific cis-Element in Angiosperms with Different Root Hair Distribution Patterns | Upstream | -563 |
Motif_258 | -10PEHVPSBD | -10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A light | Upstream | -217 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -604 |
Motif_399 | UPRMOTIFIAT | Motif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc. | Upstream | -377 |
Motif_440 | TGA1 binding site motif | Hex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG | Upstream | -377 |
Motif_441 | GAGA8HVBKN3 | GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR | Upstream | -76 |
Motif_447 | AtMYC2 BS in RD22;PIF4 | Binding site for MYC (rd22BP1) in Arabidopsis dehydration-resposive gene, rd22; MYC binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -200 of rd22 gene; Also MYB at ca. -141 of rd22 gene; See also MYBATRD22; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -583 |
| | | Upstream | -636 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -603 |
| | | Upstream | -604 |
Motif_48 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -356 |
Motif_585 | ATB2/AtbZIP53/AtbZIP44/GBF5 BS in ProDH | PRE (Pro- or hypoosmolarity-responsive element) found in the promoter region of proline dehydrogenase (ProDH) gene in Arabidopsis; Core of 9-bp sequence ACTCATCCT which is necessary for the efficient expression of ProDH in response to L-Pro and hypoosmolarity; ATB2-binding site; Similar to GCN4 motif (ATGA(C/G)TCAT); ATB2 subgroup of bZIP transcription factors function as transcriptional activator for hypoosmolarity-inducible ProDH; A Novel Subgroup of bZIP Proteins Functions as Transctiptional Activators in Hypsosmolarity-Responsive Expression of the ProDH gene in Arabidopsis | Upstream | -403 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -77 |
| | | Upstream | -79 |
| | | Upstream | -81 |
| | | Upstream | -83 |