View conserved binding sites


Gene
GM09G05000
Description
Probable histone-arginine methyltransferase 1.3
Alias
Glyma09g05000;Glyma09g05000.2;PAC:26340690;Glyma09g05000.2
Binding siteNameDescriptionLocationPosition
Matrix_119RRTF1Not availableUpstream-183
Upstream-184
Matrix_138RRTF1Not availableUpstream-183
Upstream-184
Matrix_224ERF1Not availableUpstream-183
Upstream-184
Matrix_234RAP2.3Not availableUpstream-182
Upstream-183
Matrix_261ATERF-1Not availableUpstream-183
Upstream-184
Matrix_287ERF2Not availableUpstream-182
Upstream-183
Matrix_288RAP2.3Not availableUpstream-183
Upstream-184
Matrix_295ERF1Not availableUpstream-184
Upstream-185
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-183
Upstream-184
Matrix_334AT3G23230Not availableUpstream-183
Upstream-184
Matrix_343AT2G33710Not availableUpstream-182
Upstream-183
Matrix_355ERF10;ERF11Not availableUpstream-183
Upstream-184
Matrix_360ORA59Not availableUpstream-184
Upstream-185
Matrix_363RAP2.3Not availableUpstream-183
Upstream-184
Matrix_374AT5G07580;AT5G61590Not availableUpstream-183
Upstream-184
Matrix_378ATERF1Not availableUpstream-182
Upstream-183
Matrix_396AP3Not availableUpstream-156
Upstream-157
Matrix_406ATERF-7Not availableUpstream-184
Upstream-185
Matrix_426CRF1;CRF2Not availableUpstream-183
Matrix_473RRTF1Not availableUpstream-182
Upstream-183
Matrix_484ATERF13Not availableUpstream-184
Upstream-185
Matrix_493AT1G22985;AT1G71130Not availableUpstream-183
Matrix_50ATERF14;AT5G43410Not availableUpstream-183
Upstream-184
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-183
Upstream-184
Matrix_91CRF3Not availableUpstream-183
Motif_193GLK1GLK transcription factors coordinate expression of the photosynthetic apparatus in ArabidopsisDownstream8494
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-185
Motif_320AGCBOXNPGLBAGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC boxUpstream-184
Motif_358UP2ATMSDUp2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in ArabidopsisUpstream-158
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsUpstream-1141
Motif_453HEXMOTIFTAH3H4hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding siteUpstream-609
Upstream-685
Motif_50AtERF-7;AtERF-4;AtERF-3;AtERF-1;AtERF-2;AtERF-5Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responsesUpstream-183
Motif_576TGACGTVMAMYTGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seedsUpstream-609
Upstream-685
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-191
Upstream-193
Upstream-195
Upstream-197