Matrix_119 | RRTF1 | Not available | Upstream | -165 |
Matrix_138 | RRTF1 | Not available | Upstream | -165 |
Matrix_224 | ERF1 | Not available | Upstream | -165 |
Matrix_234 | RAP2.3 | Not available | Upstream | -164 |
Matrix_261 | ATERF-1 | Not available | Upstream | -164 |
Matrix_277 | RAP2.6 | Not available | Upstream | -165 |
Matrix_287 | ERF2 | Not available | Upstream | -164 |
Matrix_288 | RAP2.3 | Not available | Upstream | -165 |
Matrix_295 | ERF1 | Not available | Upstream | -164 |
Matrix_298 | RAV1 | Not available | Upstream | -170 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -165 |
Matrix_334 | AT3G23230 | Not available | Upstream | -163 |
Matrix_343 | AT2G33710 | Not available | Upstream | -164 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -165 |
Matrix_36 | RAV1_1 | RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants | Upstream | -170 |
Matrix_360 | ORA59 | Not available | Upstream | -164 |
Matrix_363 | RAP2.3 | Not available | Upstream | -165 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -164 |
Matrix_378 | ATERF1 | Not available | Upstream | -164 |
Matrix_396 | AP3 | Not available | Intron | 205 |
| | | Intron | 636 |
Matrix_406 | ATERF-7 | Not available | Upstream | -166 |
Matrix_412 | GL1 | Not available | Downstream | 3690 |
Matrix_413 | RAV1 | Not available | Upstream | -170 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -163 |
Matrix_473 | RRTF1 | Not available | Upstream | -164 |
Matrix_484 | ATERF13 | Not available | Upstream | -164 |
Matrix_489 | RAV1 | Not available | Upstream | -168 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -164 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -165 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -163 |
Matrix_91 | CRF3 | Not available | Upstream | -164 |
Motif_153 | MARABOX1 | A-box found in SAR(scaffold attachment region; or matrix attachment region, MAR) | Upstream | -312 |
| | | Upstream | -308 |
Motif_279 | POLASIG3 | Plant polyA signal; Consensus sequence for plant polyadenylation signal | Upstream | -1677 |
Motif_292 | MYBPZM | Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes | Upstream | -46 |
| | | Upstream | -41 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -163 |
Motif_320 | AGCBOXNPGLB | AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box | Upstream | -163 |
Motif_321 | TATABOX5 | TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis | Upstream | -313 |
| | | Upstream | -309 |
| | | Upstream | -305 |
| | | Upstream | -146 |
Motif_342 | POLASIG1 | PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis | Upstream | -312 |
| | | Upstream | -308 |
| | | Upstream | -304 |
Motif_402 | AtTINY2 | Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana | Upstream | -165 |
Motif_410 | ANAERO1CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curator | Downstream | 3690 |
Motif_441 | GAGA8HVBKN3 | GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR | Upstream | -258 |
Motif_50 | AtERF-7;AtERF-4;AtERF-3;AtERF-1;AtERF-2;AtERF-5 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses | Upstream | -164 |
Motif_564 | MYB98 | MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins | Upstream | -43 |
Motif_575 | TATABOX3 | TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene | Downstream | 3702 |
Motif_609 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Downstream | 3690 |
Motif_672 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Downstream | 3690 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -258 |
| | | Upstream | -256 |
| | | Upstream | -254 |
| | | Upstream | -252 |
| | | Upstream | -194 |
| | | Upstream | -157 |
Motif_98 | SEF3MOTIFGM | SEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4 | Upstream | -43 |