View conserved binding sites


Gene
GM08G09630
Description
CCCH domain-containing protein 17
Alias
Glyma08g09630;Glyma08g09630.1;PAC:26309621;Glyma08g09630.1
Binding siteNameDescriptionLocationPosition
Matrix_119RRTF1Not availableUpstream-165
Matrix_138RRTF1Not availableUpstream-165
Matrix_224ERF1Not availableUpstream-165
Matrix_234RAP2.3Not availableUpstream-164
Matrix_261ATERF-1Not availableUpstream-164
Matrix_277RAP2.6Not availableUpstream-165
Matrix_287ERF2Not availableUpstream-164
Matrix_288RAP2.3Not availableUpstream-165
Matrix_295ERF1Not availableUpstream-164
Matrix_298RAV1Not availableUpstream-170
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-165
Matrix_334AT3G23230Not availableUpstream-163
Matrix_343AT2G33710Not availableUpstream-164
Matrix_355ERF10;ERF11Not availableUpstream-165
Matrix_36RAV1_1RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plantsUpstream-170
Matrix_360ORA59Not availableUpstream-164
Matrix_363RAP2.3Not availableUpstream-165
Matrix_374AT5G07580;AT5G61590Not availableUpstream-164
Matrix_378ATERF1Not availableUpstream-164
Matrix_396AP3Not availableIntron205
Intron636
Matrix_406ATERF-7Not availableUpstream-166
Matrix_412GL1Not availableDownstream3690
Matrix_413RAV1Not availableUpstream-170
Matrix_426CRF1;CRF2Not availableUpstream-163
Matrix_473RRTF1Not availableUpstream-164
Matrix_484ATERF13Not availableUpstream-164
Matrix_489RAV1Not availableUpstream-168
Matrix_493AT1G22985;AT1G71130Not availableUpstream-164
Matrix_50ATERF14;AT5G43410Not availableUpstream-165
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-163
Matrix_91CRF3Not availableUpstream-164
Motif_153MARABOX1A-box found in SAR(scaffold attachment region; or matrix attachment region, MAR)Upstream-312
Upstream-308
Motif_279POLASIG3Plant polyA signal; Consensus sequence for plant polyadenylation signalUpstream-1677
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-46
Upstream-41
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-163
Motif_320AGCBOXNPGLBAGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC boxUpstream-163
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisUpstream-313
Upstream-309
Upstream-305
Upstream-146
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisUpstream-312
Upstream-308
Upstream-304
Motif_402AtTINY2Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thalianaUpstream-165
Motif_410ANAERO1CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curatorDownstream3690
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRUpstream-258
Motif_50AtERF-7;AtERF-4;AtERF-3;AtERF-1;AtERF-2;AtERF-5Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responsesUpstream-164
Motif_564MYB98MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteinsUpstream-43
Motif_575TATABOX3TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A geneDownstream3702
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementDownstream3690
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementDownstream3690
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-258
Upstream-256
Upstream-254
Upstream-252
Upstream-194
Upstream-157
Motif_98SEF3MOTIFGMSEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4Upstream-43