| Matrix_101 | ERF5 | Not available | Upstream | -366 |
| Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -417 |
| Matrix_146 | ORA47 | Not available | Upstream | -366 |
| Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -366 |
| Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -417 |
| Matrix_154 | AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130 | Not available | Upstream | -368 |
| Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -467 |
| Matrix_183 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -548 |
| Matrix_186 | FHY3 | Not available | Upstream | -549 |
| Matrix_190 | ATERF1 | Not available | Upstream | -366 |
| | | Upstream | -365 |
| Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -416 |
| Matrix_224 | ERF1 | Not available | Upstream | -367 |
| Matrix_234 | RAP2.3 | Not available | Upstream | -366 |
| Matrix_252 | RAP2.6 | Not available | Upstream | -366 |
| Matrix_260 | CAMTA3 | Not available | Upstream | -419 |
| Matrix_261 | ATERF-1 | Not available | Upstream | -366 |
| Matrix_272 | DEAR4 | Not available | Upstream | -366 |
| Matrix_287 | ERF2 | Not available | Upstream | -366 |
| Matrix_288 | RAP2.3 | Not available | Upstream | -367 |
| Matrix_295 | ERF1 | Not available | Upstream | -366 |
| Matrix_301 | PIL5 | Not available | Upstream | -412 |
| Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -367 |
| Matrix_332 | SPT;ALC | Not available | Upstream | -420 |
| Matrix_334 | AT3G23230 | Not available | Upstream | -365 |
| Matrix_343 | AT2G33710 | Not available | Upstream | -366 |
| Matrix_344 | ATERF15;AT4G18450 | Not available | Upstream | -366 |
| Matrix_355 | ERF10;ERF11 | Not available | Upstream | -367 |
| Matrix_360 | ORA59 | Not available | Upstream | -366 |
| Matrix_363 | RAP2.3 | Not available | Upstream | -367 |
| Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -366 |
| Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -366 |
| Matrix_378 | ATERF1 | Not available | Upstream | -366 |
| Matrix_387 | ORA47 | Not available | Upstream | -368 |
| Matrix_39 | AP1 | Not available | Upstream | -384 |
| Matrix_395 | AT1G19210;ORA47;AT4G31060;AT5G21960 | Not available | Upstream | -367 |
| Matrix_406 | ATERF-7 | Not available | Upstream | -368 |
| Matrix_409 | DEAR3 | Not available | Upstream | -367 |
| Matrix_426 | CRF1;CRF2 | Not available | Upstream | -365 |
| Matrix_45 | DRN | Not available | Upstream | -366 |
| Matrix_462 | ATERF-8 | Not available | Upstream | -368 |
| Matrix_473 | RRTF1 | Not available | Upstream | -366 |
| Matrix_48 | PI | Not available | Upstream | -384 |
| Matrix_484 | ATERF13 | Not available | Upstream | -366 |
| Matrix_49 | FHY3/FAR1 | Not available | Upstream | -551 |
| Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -366 |
| Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -367 |
| Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -365 |
| Matrix_517 | ERF12 | Not available | Upstream | -366 |
| Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -367 |
| Matrix_77 | PRR5 | Not available | Upstream | -549 |
| Matrix_80 | BIM1 | Not available | Upstream | -419 |
| Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -365 |
| Matrix_91 | CRF3 | Not available | Upstream | -366 |
| Motif_174 | SREATMSD | sugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in Arabidopsis | Upstream | -386 |
| Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -419 |
| Motif_244 | ABRE-like binding site motif | Not available | Upstream | -413 |
| Motif_305 | SP1SV40 | SP-1 binding site (GC box) in enhancer regions of SV40 and human metallothionein IIA (hMT IIA) | Upstream | -366 |
| Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -365 |
| Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -419 |
| Motif_638 | ABRE binding site motif | Not available | Upstream | -413 |
| Motif_641 | LRENPCABE | LRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241 | Upstream | -414 |
| Motif_72 | GADOWNAT | Sequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABRE | Upstream | -1904 |
Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench