View conserved binding sites


Gene
GM06G06101
Description
Ethylene-responsive transcription factor
Alias
Glyma06g06101;Glyma06g06101.1;PAC:26300231;Glyma06g06101.1
Binding siteNameDescriptionLocationPosition
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-358
Matrix_113ABI5Not availableUpstream-360
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-356
Matrix_119RRTF1Not availableUpstream-78
Upstream-79
Matrix_120BEE2Not availableUpstream-359
Matrix_122ABF1;AREB2Not availableUpstream-358
Matrix_138RRTF1Not availableUpstream-78
Upstream-79
Matrix_14ZCW32;AT5G62610Not availableUpstream-360
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-359
Matrix_186FHY3Not availableUpstream-357
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-359
Matrix_224ERF1Not availableUpstream-78
Upstream-79
Upstream-851
Matrix_233MYC3Not availableUpstream-360
Matrix_247PIF3Not availableUpstream-359
Matrix_260CAMTA3Not availableUpstream-286
Matrix_261ATERF-1Not availableUpstream-79
Matrix_277RAP2.6Not availableUpstream-78
Upstream-79
Upstream-851
Matrix_287ERF2Not availableUpstream-79
Upstream-80
Upstream-852
Matrix_288RAP2.3Not availableUpstream-78
Matrix_295ERF1Not availableUpstream-79
Upstream-80
Upstream-852
Matrix_317AT1G06070;AT2G31370;AT2G40620Not availableUpstream-81
Matrix_320MYC4Not availableUpstream-360
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-78
Upstream-79
Matrix_330MYC2;TT8Not availableUpstream-359
Matrix_332SPT;ALCNot availableUpstream-360
Matrix_334AT3G23230Not availableUpstream-80
Upstream-81
Matrix_343AT2G33710Not availableUpstream-79
Upstream-80
Upstream-852
Matrix_345POC1Not availableUpstream-356
Matrix_355ERF10;ERF11Not availableUpstream-78
Upstream-79
Matrix_360ORA59Not availableUpstream-79
Upstream-80
Upstream-852
Matrix_363RAP2.3Not availableUpstream-78
Upstream-79
Matrix_365AT1G10120;AT1G25330;CIB5;AT1G68920;AT3G23690;CIB1Not availableUpstream-360
Matrix_369AT2G18300Not availableUpstream-357
Upstream-359
Matrix_374AT5G07580;AT5G61590Not availableUpstream-79
Upstream-80
Matrix_378ATERF1Not availableUpstream-79
Upstream-80
Upstream-852
Matrix_389ILR3Not availableUpstream-359
Matrix_403BZR1Not availableUpstream-357
Matrix_405DREB2CNot availableUpstream-80
Matrix_426CRF1;CRF2Not availableUpstream-80
Matrix_437MYC2Not availableUpstream-360
Matrix_449BIM2Not availableUpstream-359
Matrix_465MYC4Not availableUpstream-359
Matrix_476bHLH115;bHLH34Not availableUpstream-360
Matrix_480BES1Not availableUpstream-359
Matrix_484ATERF13Not availableUpstream-79
Matrix_49FHY3/FAR1Not availableUpstream-355
Matrix_50ATERF14;AT5G43410Not availableUpstream-78
Upstream-79
Matrix_506DRNL;ATERF-4Not availableUpstream-80
Matrix_53MYC3Not availableUpstream-361
Matrix_55PIF3Not availableUpstream-358
Matrix_60AT1G01260;AT5G57150Not availableUpstream-360
Matrix_7PIF4Not availableUpstream-361
Matrix_77PRR5Not availableUpstream-357
Matrix_80BIM1Not availableUpstream-358
Upstream-360
Matrix_81YAB1Not availableUpstream-880
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-80
Upstream-81
Matrix_91CRF3Not availableUpstream-79
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-240
Upstream-359
Upstream-755
Upstream-798
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-360
Motif_195TATABOX4TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-111
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-202
Upstream-359
Upstream-360
Upstream-917
Upstream-1379
Motif_250ACGTOSGLUB1ACGT motif found in GluB-1 gene in rice; Required for endosperm-specific expression; Conserved in the 5'-flanking region of glutelin genes; Combination of GCN4, AACA and ACGT motifs was found sufficient to confer a detectable level of endosperm expressionUpstream-750
Upstream-753
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-292
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-637
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-80
Upstream-852
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-288
Motif_320AGCBOXNPGLBAGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC boxUpstream-80
Upstream-852
Motif_329AMMORESIIUDCRNIA1Motifs (IIU and IID) found in the Chlamydomonas Nia1 gene promoter; Involved in ammonium-response; Located between -231 and -219 and also between -76 and -65; Involved in Nia1 transcription activationUpstream-292
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-360
Upstream-750
Upstream-754
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisUpstream-632
Upstream-646
Motif_348WBBOXPCWRKY1WB box; WRKY proteins bind specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box; Found in amylase gene in sweet potato, alpha-Amy2 genes in wheat, barley, and wild oat, PR1 gene in parsley, and a transcription factor gene in ArabidopsisUpstream-604
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-360
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsUpstream-77
Motif_453HEXMOTIFTAH3H4hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding siteUpstream-383
Upstream-1142
Motif_563PYRIMIDINEBOXOSRAMY1APyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this siteUpstream-225
Motif_576TGACGTVMAMYTGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seedsUpstream-383
Upstream-1142
Motif_642SEF1MOTIFSEF1 (soybean embryo factor 1) binding motif; sequence found in 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S globulin) geneUpstream-643
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-638