Matrix_119 | RRTF1 | Not available | Upstream | -55 |
| | | Upstream | -56 |
Matrix_179 | AtMYB84;MYB36;MYB68;O49746_ARATH | Not available | Upstream | -32 |
| | | Upstream | -36 |
Matrix_190 | ATERF1 | Not available | Upstream | -53 |
| | | Upstream | -54 |
Matrix_234 | RAP2.3 | Not available | Upstream | -54 |
| | | Upstream | -55 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -52 |
| | | Upstream | -53 |
Matrix_252 | RAP2.6 | Not available | Upstream | -54 |
| | | Upstream | -55 |
Matrix_277 | RAP2.6 | Not available | Upstream | -52 |
| | | Upstream | -53 |
Matrix_334 | AT3G23230 | Not available | Upstream | -52 |
| | | Upstream | -53 |
Matrix_343 | AT2G33710 | Not available | Upstream | -54 |
| | | Upstream | -55 |
Matrix_344 | ATERF15;AT4G18450 | Not available | Upstream | -53 |
| | | Upstream | -54 |
Matrix_360 | ORA59 | Not available | Upstream | -53 |
| | | Upstream | -54 |
Matrix_378 | ATERF1 | Not available | Upstream | -54 |
| | | Upstream | -55 |
Matrix_405 | DREB2C | Not available | Upstream | -53 |
| | | Upstream | -54 |
Matrix_406 | ATERF-7 | Not available | Upstream | -53 |
| | | Upstream | -54 |
Matrix_473 | RRTF1 | Not available | Upstream | -54 |
| | | Upstream | -55 |
Matrix_484 | ATERF13 | Not available | Upstream | -53 |
| | | Upstream | -54 |
Matrix_496 | ATMYB15 | Not available | Upstream | -36 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -52 |
| | | Upstream | -53 |
Matrix_510 | AtMYB84 | More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana | Upstream | -32 |
| | | Upstream | -36 |
Motif_270 | ELRECOREPCRP1 | ElRE (Elicitor Responsive Element) core of parsley PR1 genes; consensus sequence of elements W1 and W2 of parsley PR1-1 and PR1-2 promoters; Box W1 and W2 are the binding site of WRKY1 and WRKY2, respectively; ERE; WA box; One of the W boxes found in the Parsley WRKY1 gene promoter; Required for elicitor responsiveness; WC box WB box and WC box constitute a palindrome; WRKY1 protein binding site; W-box found in thioredoxin h5 gene in Arabidopsis | Upstream | -20 |
Motif_274 | MYB1 binding site motif | Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein | Downstream | 2610 |
Motif_292 | MYBPZM | Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes | Downstream | 2608 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Downstream | 2664 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -54 |
Motif_348 | WBBOXPCWRKY1 | WB box; WRKY proteins bind specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box; Found in amylase gene in sweet potato, alpha-Amy2 genes in wheat, barley, and wild oat, PR1 gene in parsley, and a transcription factor gene in Arabidopsis | Upstream | -19 |
| | | Upstream | -1357 |
Motif_370 | TATABOX2 | TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | Upstream | -544 |
| | | Upstream | -563 |
| | | Upstream | -742 |
Motif_450 | E2FCONSENSUS | E2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plants | Upstream | -50 |