| Matrix_224 | ERF1 | Not available | Upstream | -1183 |
| Matrix_234 | RAP2.3 | Not available | Upstream | -1181 |
| Matrix_252 | RAP2.6 | Not available | Upstream | -1181 |
| Matrix_372 | ANAC81 | DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virus | Intron | 642 |
| Matrix_406 | ATERF-7 | Not available | Upstream | -787 |
| | | Upstream | -1182 |
| Matrix_426 | CRF1;CRF2 | Not available | Upstream | -1182 |
| Matrix_462 | ATERF-8 | Not available | Upstream | -787 |
| Matrix_484 | ATERF13 | Not available | Upstream | -1184 |
| Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -1180 |
| Motif_279 | POLASIG3 | Plant polyA signal; Consensus sequence for plant polyadenylation signal | Upstream | -386 |
| | | Upstream | -389 |
| | | Upstream | -392 |
| Motif_43 | CCA1 binding site motif | CCA1 binding site; CCA1 protein (myb-related transcription factor) interact with two imperfect repeats of AAMAATCT in Lhcb1*3 gene of Arabidopsis thaliana; Related to regulation by phytochrome;A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene | Upstream | -188 |
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