View conserved binding sites


Gene
GM01G01370
Description
Phosphoribulokinase, chloroplastic
Alias
Glyma01g01370;Glyma01g01370.1;PAC:26325218;Glyma01g01370.1
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-510
Upstream-511
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-510
Upstream-511
Matrix_109GBF3Not availableUpstream-510
Upstream-511
Upstream-512
Upstream-513
Upstream-959
Matrix_113ABI5Not availableUpstream-510
Upstream-511
Upstream-512
Upstream-513
Upstream-959
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-507
Upstream-508
Upstream-509
Upstream-954
Upstream-955
Matrix_120BEE2Not availableUpstream-511
Upstream-512
Matrix_122ABF1;AREB2Not availableUpstream-510
Upstream-511
Upstream-512
Matrix_129ABF1Not availableUpstream-511
Upstream-512
Matrix_134ABF1Not availableUpstream-511
Upstream-512
Upstream-513
Matrix_14ZCW32;AT5G62610Not availableUpstream-511
Upstream-512
Upstream-513
Matrix_145GBF4;AT5G44080Not availableUpstream-512
Upstream-513
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-507
Upstream-508
Upstream-954
Matrix_156POC1Not availableUpstream-510
Upstream-511
Upstream-512
Upstream-513
Upstream-959
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-511
Upstream-512
Matrix_192FHY3/FAR1Not availableUpstream-508
Upstream-509
Upstream-512
Upstream-513
Matrix_194HYH;HY5Not availableUpstream-508
Upstream-509
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-511
Upstream-512
Matrix_214AP1Not availableUpstream-509
Upstream-510
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-508
Upstream-509
Upstream-512
Upstream-513
Matrix_233MYC3Not availableUpstream-512
Upstream-513
Matrix_24POC1Not availableUpstream-507
Upstream-508
Upstream-954
Matrix_247PIF3Not availableUpstream-511
Upstream-512
Upstream-958
Matrix_259AT1G50680;AT1G51120Not availableUpstream-511
Upstream-512
Matrix_264ATAREB1Not availableUpstream-508
Upstream-509
Upstream-511
Upstream-512
Matrix_296GBF2Not availableUpstream-511
Upstream-512
Upstream-513
Upstream-959
Matrix_300bZIP68;bZIP16Not availableUpstream-511
Upstream-512
Upstream-513
Upstream-959
Matrix_301PIL5Not availableUpstream-506
Upstream-507
Upstream-512
Upstream-513
Matrix_323BIM3Not availableUpstream-511
Upstream-512
Matrix_330MYC2;TT8Not availableUpstream-511
Upstream-512
Matrix_331GBF1Not availableUpstream-510
Upstream-511
Upstream-512
Upstream-513
Upstream-959
Matrix_332SPT;ALCNot availableUpstream-511
Upstream-512
Upstream-513
Matrix_338AP2Not availableUpstream-508
Upstream-509
Matrix_339bHLH104Not availableUpstream-511
Upstream-512
Matrix_345POC1Not availableUpstream-507
Upstream-508
Upstream-509
Upstream-954
Upstream-955
Matrix_356PRR5Not availableUpstream-504
Upstream-505
Upstream-508
Upstream-509
Matrix_389ILR3Not availableUpstream-511
Upstream-512
Matrix_403BZR1Not availableUpstream-509
Upstream-510
Upstream-956
Matrix_443AGL15Not availableUpstream-509
Upstream-510
Matrix_449BIM2Not availableUpstream-511
Upstream-512
Matrix_453EIL3Not availableUpstream-519
Matrix_465MYC4Not availableUpstream-511
Upstream-512
Matrix_48PINot availableUpstream-7
Matrix_488ABF1Not availableUpstream-503
Upstream-504
Upstream-510
Upstream-511
Upstream-957
Matrix_55PIF3Not availableUpstream-510
Upstream-511
Matrix_60AT1G01260;AT5G57150Not availableUpstream-512
Upstream-513
Matrix_64PIF5Not availableUpstream-512
Upstream-513
Matrix_65POC1;PIL1Not availableUpstream-512
Upstream-513
Matrix_7PIF4Not availableUpstream-511
Upstream-512
Upstream-513
Upstream-514
Matrix_77PRR5Not availableUpstream-509
Upstream-510
Upstream-511
Matrix_80BIM1Not availableUpstream-510
Upstream-512
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-562
Motif_125BOXIINTPATPBBox II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoterUpstream-265
Motif_136SEF4MOTIFGM7SSEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)Upstream-245
Motif_15AMYBOX2amylase box; amylase element; Conserved sequence found in 5'upstream region of alpha-amylase gene of rice, wheat, barleyUpstream-496
Motif_168IBOXI box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated geneDownstream4056
Motif_174SREATMSDsugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in ArabidopsisDownstream4057
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-513
Upstream-1423
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-513
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFUpstream-511
Upstream-512
Motif_210REBETALGLHCB21REbeta found in Lemna gibba Lhcb21 gene promoter; Located at -114 to -109; A GATA sequence created at a position six nucleotides upstream could replace the function of REbeta; Required for phytochrome regulationDownstream4058
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-512
Upstream-513
Upstream-1422
Motif_244ABRE-like binding site motifNot availableUpstream-511
Upstream-513
Upstream-1421
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-511
Upstream-513
Motif_300ACGTROOT1;HY5Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. ACGT motif related to root expression; Gene: synthetic; perfect palindromic sequence (PA) containing G-box-related sequence; transacting factor: TAF-1; Binding of SGBF-1 (a Soybean G-box binding bZIP transcription factor) to ABRE is enhanced by SCOF-1 (a zinc finger protein ); Transcription of SCOF-1 is induced by low temperature and ABAUpstream-511
Motif_307TATCCAYMOTIFOSRAMY3DTATCCAY motif found in rice RAmy3D alpha-amylase gene promoter; a GATA motif as its antisense sequence; TATCCAY motif and G motif are responsible for sugar repressionUpstream-496
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-16
Upstream-263
Motif_332SV40COREENHANSV40 core enhancer; Similar sequences found in rbcS genesUpstream-482
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-513
Upstream-1423
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-512
Upstream-513
Motif_459SORLIP1Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-56
Upstream-530
Motif_473ABREOSRGA1ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxiaUpstream-512
Motif_530CPBCSPORThe sequence critical for Cytokinin-enhanced Protein Binding in vitro, found in -490 to -340 of the promoter of the cucumber POR (NADPH-protochlorophyllide reductase) geneDownstream4003
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-511
Upstream-514
Motif_563PYRIMIDINEBOXOSRAMY1APyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this siteUpstream-147
Upstream-303
Upstream-659
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-144
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisUpstream-483
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-511
Upstream-514
Motif_628TATCCAOSAMYTATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2Upstream-497
Motif_638ABRE binding site motifNot availableUpstream-511
Upstream-513
Motif_641LRENPCABELRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241Upstream-510
Upstream-514
Motif_6492SSEEDPROTBANAPAConserved in many storage-protein gene promoters; May be important for high activity of the napA promoterUpstream-1309
Upstream-1665
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-252
Upstream-331
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-144
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-331
Motif_683AtMYB2 BS in RD22Binding site for MYB (ATMYB2) in dehydration-responsive gene, rd22; MYB binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -141 of rd22 gene; Also MYC at ca. -200 of rd22 gene; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expressionUpstream-483
Motif_79UPRMOTIFIIATMotif II in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etcUpstream-515