View conserved binding sites


Gene
CM01596G04780
Description
Putative HVA22-like protein g
Alias
MELO3C003758;MELO3C003758T1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-1018
Upstream-1019
Upstream-1020
Matrix_105SPL14Not availableUpstream-1476
Matrix_110ATABI4;AT3G57600Not availableUpstream-1018
Upstream-1019
Matrix_119RRTF1Not availableUpstream-1020
Upstream-1021
Matrix_138RRTF1Not availableUpstream-1020
Upstream-1021
Matrix_146ORA47Not availableUpstream-1018
Upstream-1019
Upstream-1020
Matrix_147ERF3;AT1G80580Not availableUpstream-1018
Upstream-1019
Upstream-1021
Upstream-1022
Matrix_154AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130Not availableUpstream-1277
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-1020
Upstream-1021
Matrix_190ATERF1Not availableUpstream-1018
Upstream-1019
Upstream-1020
Matrix_224ERF1Not availableUpstream-1020
Upstream-1021
Matrix_234RAP2.3Not availableUpstream-1018
Upstream-1019
Upstream-1020
Matrix_242AT2G25820;AT3G16280;AT4G32800;TINY2;tnyNot availableUpstream-1571
Matrix_243RAP2.12;RAP2.2Not availableUpstream-1020
Upstream-1021
Matrix_244DREB2CNot availableUpstream-1570
Matrix_252RAP2.6Not availableUpstream-1018
Upstream-1019
Upstream-1020
Matrix_261ATERF-1Not availableUpstream-1020
Upstream-1021
Matrix_272DEAR4Not availableUpstream-1018
Upstream-1019
Upstream-1020
Matrix_280TCP24;TCP1;BRC2;ATTCP18Not availableUpstream-1018
Matrix_287ERF2Not availableUpstream-1018
Upstream-1019
Upstream-1020
Matrix_288RAP2.3Not availableUpstream-1020
Upstream-1021
Matrix_295ERF1Not availableUpstream-1021
Upstream-1022
Matrix_313ATMYB65;MYB33Not availableUpstream-1040
Matrix_321HRDNot availableUpstream-1020
Upstream-1021
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-1020
Upstream-1021
Matrix_334AT3G23230Not availableUpstream-1020
Upstream-1021
Matrix_343AT2G33710Not availableUpstream-1019
Upstream-1020
Matrix_355ERF10;ERF11Not availableUpstream-1020
Upstream-1021
Matrix_360ORA59Not availableUpstream-1021
Upstream-1022
Matrix_363RAP2.3Not availableUpstream-1020
Upstream-1021
Matrix_374AT5G07580;AT5G61590Not availableUpstream-1018
Upstream-1019
Upstream-1020
Upstream-1021
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-1020
Upstream-1021
Matrix_378ATERF1Not availableUpstream-1018
Upstream-1019
Upstream-1020
Matrix_382AT3G04850Not availableUpstream-1285
Matrix_387ORA47Not availableUpstream-1277
Matrix_395AT1G19210;ORA47;AT4G31060;AT5G21960Not availableUpstream-1277
Matrix_406ATERF-7Not availableUpstream-1021
Upstream-1022
Matrix_409DEAR3Not availableUpstream-1020
Upstream-1021
Matrix_426CRF1;CRF2Not availableUpstream-1020
Upstream-1021
Matrix_45DRNNot availableUpstream-1018
Upstream-1019
Upstream-1021
Upstream-1022
Matrix_462ATERF-8Not availableUpstream-1021
Upstream-1022
Matrix_473RRTF1Not availableUpstream-1018
Upstream-1019
Upstream-1020
Matrix_478AT1G01250Not availableUpstream-1571
Matrix_484ATERF13Not availableUpstream-1021
Upstream-1022
Matrix_493AT1G22985;AT1G71130Not availableUpstream-1020
Upstream-1021
Matrix_50ATERF14;AT5G43410Not availableUpstream-1020
Upstream-1021
Matrix_506DRNL;ATERF-4Not availableUpstream-1020
Upstream-1021
Matrix_517ERF12Not availableUpstream-1018
Upstream-1019
Upstream-1021
Upstream-1022
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-1017
Upstream-1018
Upstream-1020
Upstream-1021
Upstream-1033
Upstream-1034
Matrix_6AT1G70000Not availableUpstream-1698
Matrix_73DEAR3;RAP2.9;RAP2.10Not availableUpstream-1571
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-1019
Upstream-1020
Upstream-1021
Matrix_91CRF3Not availableUpstream-1020
Upstream-1021
Motif_129GAGAGMGSA1GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNAUpstream-1091
Upstream-1093
Upstream-1095
Motif_155NODCON1GMOne of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodulesUpstream-1073
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-1044
Motif_189CMSRE1IBSPOACMSRE-1 (Carbohydrate Metabolite Signal Responsive Element 1) found in the promoter of sweet potato sporamin A geneUpstream-1279
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-1044
Motif_223LTRE1HVBLT49LTRE-1 (low-temperature-responsive element) in barley (H.v.) blt4.9 gene promoter; A new LTRE; A previously known LTRE is CCGACUpstream-956
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-1069
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-1022
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-1044
Motif_392PALBOXAPCBox A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box LUpstream-1279
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRUpstream-1091
Upstream-1093
Upstream-1095
Upstream-1097
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsUpstream-1023
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Downstream1951
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-1070
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-1092
Upstream-1094
Upstream-1096
Upstream-1098
Upstream-1100
Upstream-1102
Upstream-1104