Matrix_101 | ERF5 | Not available | Upstream | -1018 |
| | | Upstream | -1019 |
| | | Upstream | -1020 |
Matrix_105 | SPL14 | Not available | Upstream | -1476 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -1018 |
| | | Upstream | -1019 |
Matrix_119 | RRTF1 | Not available | Upstream | -1020 |
| | | Upstream | -1021 |
Matrix_138 | RRTF1 | Not available | Upstream | -1020 |
| | | Upstream | -1021 |
Matrix_146 | ORA47 | Not available | Upstream | -1018 |
| | | Upstream | -1019 |
| | | Upstream | -1020 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -1018 |
| | | Upstream | -1019 |
| | | Upstream | -1021 |
| | | Upstream | -1022 |
Matrix_154 | AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130 | Not available | Upstream | -1277 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -1020 |
| | | Upstream | -1021 |
Matrix_190 | ATERF1 | Not available | Upstream | -1018 |
| | | Upstream | -1019 |
| | | Upstream | -1020 |
Matrix_224 | ERF1 | Not available | Upstream | -1020 |
| | | Upstream | -1021 |
Matrix_234 | RAP2.3 | Not available | Upstream | -1018 |
| | | Upstream | -1019 |
| | | Upstream | -1020 |
Matrix_242 | AT2G25820;AT3G16280;AT4G32800;TINY2;tny | Not available | Upstream | -1571 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -1020 |
| | | Upstream | -1021 |
Matrix_244 | DREB2C | Not available | Upstream | -1570 |
Matrix_252 | RAP2.6 | Not available | Upstream | -1018 |
| | | Upstream | -1019 |
| | | Upstream | -1020 |
Matrix_261 | ATERF-1 | Not available | Upstream | -1020 |
| | | Upstream | -1021 |
Matrix_272 | DEAR4 | Not available | Upstream | -1018 |
| | | Upstream | -1019 |
| | | Upstream | -1020 |
Matrix_280 | TCP24;TCP1;BRC2;ATTCP18 | Not available | Upstream | -1018 |
Matrix_287 | ERF2 | Not available | Upstream | -1018 |
| | | Upstream | -1019 |
| | | Upstream | -1020 |
Matrix_288 | RAP2.3 | Not available | Upstream | -1020 |
| | | Upstream | -1021 |
Matrix_295 | ERF1 | Not available | Upstream | -1021 |
| | | Upstream | -1022 |
Matrix_313 | ATMYB65;MYB33 | Not available | Upstream | -1040 |
Matrix_321 | HRD | Not available | Upstream | -1020 |
| | | Upstream | -1021 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -1020 |
| | | Upstream | -1021 |
Matrix_334 | AT3G23230 | Not available | Upstream | -1020 |
| | | Upstream | -1021 |
Matrix_343 | AT2G33710 | Not available | Upstream | -1019 |
| | | Upstream | -1020 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -1020 |
| | | Upstream | -1021 |
Matrix_360 | ORA59 | Not available | Upstream | -1021 |
| | | Upstream | -1022 |
Matrix_363 | RAP2.3 | Not available | Upstream | -1020 |
| | | Upstream | -1021 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -1018 |
| | | Upstream | -1019 |
| | | Upstream | -1020 |
| | | Upstream | -1021 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -1020 |
| | | Upstream | -1021 |
Matrix_378 | ATERF1 | Not available | Upstream | -1018 |
| | | Upstream | -1019 |
| | | Upstream | -1020 |
Matrix_382 | AT3G04850 | Not available | Upstream | -1285 |
Matrix_387 | ORA47 | Not available | Upstream | -1277 |
Matrix_395 | AT1G19210;ORA47;AT4G31060;AT5G21960 | Not available | Upstream | -1277 |
Matrix_406 | ATERF-7 | Not available | Upstream | -1021 |
| | | Upstream | -1022 |
Matrix_409 | DEAR3 | Not available | Upstream | -1020 |
| | | Upstream | -1021 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -1020 |
| | | Upstream | -1021 |
Matrix_45 | DRN | Not available | Upstream | -1018 |
| | | Upstream | -1019 |
| | | Upstream | -1021 |
| | | Upstream | -1022 |
Matrix_462 | ATERF-8 | Not available | Upstream | -1021 |
| | | Upstream | -1022 |
Matrix_473 | RRTF1 | Not available | Upstream | -1018 |
| | | Upstream | -1019 |
| | | Upstream | -1020 |
Matrix_478 | AT1G01250 | Not available | Upstream | -1571 |
Matrix_484 | ATERF13 | Not available | Upstream | -1021 |
| | | Upstream | -1022 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -1020 |
| | | Upstream | -1021 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -1020 |
| | | Upstream | -1021 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -1020 |
| | | Upstream | -1021 |
Matrix_517 | ERF12 | Not available | Upstream | -1018 |
| | | Upstream | -1019 |
| | | Upstream | -1021 |
| | | Upstream | -1022 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -1017 |
| | | Upstream | -1018 |
| | | Upstream | -1020 |
| | | Upstream | -1021 |
| | | Upstream | -1033 |
| | | Upstream | -1034 |
Matrix_6 | AT1G70000 | Not available | Upstream | -1698 |
Matrix_73 | DEAR3;RAP2.9;RAP2.10 | Not available | Upstream | -1571 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -1019 |
| | | Upstream | -1020 |
| | | Upstream | -1021 |
Matrix_91 | CRF3 | Not available | Upstream | -1020 |
| | | Upstream | -1021 |
Motif_129 | GAGAGMGSA1 | GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNA | Upstream | -1091 |
| | | Upstream | -1093 |
| | | Upstream | -1095 |
Motif_155 | NODCON1GM | One of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodules | Upstream | -1073 |
Motif_182 | MYB2CONSENSUSAT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22 | Upstream | -1044 |
Motif_189 | CMSRE1IBSPOA | CMSRE-1 (Carbohydrate Metabolite Signal Responsive Element 1) found in the promoter of sweet potato sporamin A gene | Upstream | -1279 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Upstream | -1044 |
Motif_223 | LTRE1HVBLT49 | LTRE-1 (low-temperature-responsive element) in barley (H.v.) blt4.9 gene promoter; A new LTRE; A previously known LTRE is CCGAC | Upstream | -956 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Upstream | -1069 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -1022 |
Motif_336 | MYBMOUSE | Binding site for mouse c-myb protein | Upstream | -1044 |
Motif_392 | PALBOXAPC | Box A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box L | Upstream | -1279 |
Motif_441 | GAGA8HVBKN3 | GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR | Upstream | -1091 |
| | | Upstream | -1093 |
| | | Upstream | -1095 |
| | | Upstream | -1097 |
Motif_450 | E2FCONSENSUS | E2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plants | Upstream | -1023 |
Motif_503 | EECCRCAH1 | EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1 | Downstream | 1951 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -1070 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -1092 |
| | | Upstream | -1094 |
| | | Upstream | -1096 |
| | | Upstream | -1098 |
| | | Upstream | -1100 |
| | | Upstream | -1102 |
| | | Upstream | -1104 |