View conserved binding sites


Gene
CM00043G01270
Description
Non-lysosomal glucosylceramidase
Alias
MELO3C020463;MELO3C020463T1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-552
Upstream-553
Upstream-554
Upstream-555
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-544
Matrix_147ERF3;AT1G80580Not availableUpstream-554
Matrix_151ASIL1Not availableUpstream-553
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-553
Upstream-555
Matrix_190ATERF1Not availableUpstream-552
Matrix_234RAP2.3Not availableUpstream-808
Matrix_237MYB55Not availableIntron2853
Matrix_252RAP2.6Not availableUpstream-552
Matrix_343AT2G33710Not availableUpstream-552
Matrix_344ATERF15;AT4G18450Not availableUpstream-554
Matrix_345POC1Not availableUpstream-544
Matrix_356PRR5Not availableUpstream-544
Matrix_374AT5G07580;AT5G61590Not availableUpstream-553
Upstream-554
Matrix_378ATERF1Not availableUpstream-808
Matrix_406ATERF-7Not availableUpstream-552
Upstream-554
Matrix_412GL1Not availableIntron973
Matrix_433ATERF1Not availableUpstream-553
Matrix_434ARR11Not availableUpstream-1697
Matrix_438AtbZIP63Not availableUpstream-547
Upstream-548
Matrix_439AP3Not availableIntron2786
Matrix_448ATERF6Not availableUpstream-553
Matrix_45DRNNot availableUpstream-554
Matrix_461ATHB12Not availableUpstream-508
Matrix_462ATERF-8Not availableUpstream-552
Upstream-554
Matrix_473RRTF1Not availableUpstream-808
Matrix_48PINot availableUpstream-1517
Matrix_484ATERF13Not availableUpstream-554
Upstream-555
Matrix_488ABF1Not availableUpstream-540
Upstream-546
Upstream-547
Upstream-556
Matrix_493AT1G22985;AT1G71130Not availableUpstream-553
Upstream-554
Upstream-555
Matrix_5AT5G51190;ERF104Not availableUpstream-554
Matrix_511AT1G05805;AT1G35460;AT1G51140;AT2G42280;AT2G43140;AT4G09180Not availableUpstream-603
Matrix_517ERF12Not availableUpstream-551
Upstream-552
Upstream-808
Matrix_56BZIP17;BZIP28;BZIP49Not availableUpstream-548
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-548
Motif_150RBCSCONSENSUSrbcS general consensus sequence; AATCCAA or AATCCAACUpstream-262
Motif_192BOXLCOREDCPALConsensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitroIntron2852
Motif_193GLK1GLK transcription factors coordinate expression of the photosynthetic apparatus in ArabidopsisUpstream-158
Upstream-260
Upstream-511
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-604
Motif_195TATABOX4TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-1312
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisIntron2850
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesIntron2852
Motif_274MYB1 binding site motifIsolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoproteinUpstream-263
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesIntron2851
Upstream-265
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisUpstream-951
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-549
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisUpstream-950
Motif_391REALPHALGLHCB21REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulationIntron2853
Upstream-267
Motif_419MYB4 binding site motifNot availableIntron2852
Motif_426MYB58;MYB63MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in ArabidopsisIntron2852
Motif_459SORLIP1Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-562
Motif_484RAV1-B binding site motifBinding consensus sequence of an Arabidopsis transcription factor, RAV1; RAV1 specifically binds to DNA with bipartite sequence motifs of RAV1-A (CAACA) and RAV1-B (CACCTG); RAV1 protein contain AP2-like and B3-like domains; The AP2-like and B3-like domains recognize the CAACA and CACCTG motifs, respectively; The expression level of RAV1 were relatively high in rosette leaves and roots; RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plantsUpstream-565
Motif_49TATAPVTRNALEUTATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP)Upstream-1312
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Intron2793
Motif_563PYRIMIDINEBOXOSRAMY1APyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this siteIntron2833
Motif_57ABREOSRAB21ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em geneUpstream-550
Motif_575TATABOX3TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A geneUpstream-1307
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Upstream-946
Upstream-949
Upstream-951
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisIntron2854
Motif_645BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-604
Motif_666MYB binding site promoterA flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genesIntron2853