Matrix_101 | ERF5 | Not available | Upstream | -552 |
| | | Upstream | -553 |
| | | Upstream | -554 |
| | | Upstream | -555 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -544 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -554 |
Matrix_151 | ASIL1 | Not available | Upstream | -553 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -553 |
| | | Upstream | -555 |
Matrix_190 | ATERF1 | Not available | Upstream | -552 |
Matrix_234 | RAP2.3 | Not available | Upstream | -808 |
Matrix_237 | MYB55 | Not available | Intron | 2853 |
Matrix_252 | RAP2.6 | Not available | Upstream | -552 |
Matrix_343 | AT2G33710 | Not available | Upstream | -552 |
Matrix_344 | ATERF15;AT4G18450 | Not available | Upstream | -554 |
Matrix_345 | POC1 | Not available | Upstream | -544 |
Matrix_356 | PRR5 | Not available | Upstream | -544 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -553 |
| | | Upstream | -554 |
Matrix_378 | ATERF1 | Not available | Upstream | -808 |
Matrix_406 | ATERF-7 | Not available | Upstream | -552 |
| | | Upstream | -554 |
Matrix_412 | GL1 | Not available | Intron | 973 |
Matrix_433 | ATERF1 | Not available | Upstream | -553 |
Matrix_434 | ARR11 | Not available | Upstream | -1697 |
Matrix_438 | AtbZIP63 | Not available | Upstream | -547 |
| | | Upstream | -548 |
Matrix_439 | AP3 | Not available | Intron | 2786 |
Matrix_448 | ATERF6 | Not available | Upstream | -553 |
Matrix_45 | DRN | Not available | Upstream | -554 |
Matrix_461 | ATHB12 | Not available | Upstream | -508 |
Matrix_462 | ATERF-8 | Not available | Upstream | -552 |
| | | Upstream | -554 |
Matrix_473 | RRTF1 | Not available | Upstream | -808 |
Matrix_48 | PI | Not available | Upstream | -1517 |
Matrix_484 | ATERF13 | Not available | Upstream | -554 |
| | | Upstream | -555 |
Matrix_488 | ABF1 | Not available | Upstream | -540 |
| | | Upstream | -546 |
| | | Upstream | -547 |
| | | Upstream | -556 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -553 |
| | | Upstream | -554 |
| | | Upstream | -555 |
Matrix_5 | AT5G51190;ERF104 | Not available | Upstream | -554 |
Matrix_511 | AT1G05805;AT1G35460;AT1G51140;AT2G42280;AT2G43140;AT4G09180 | Not available | Upstream | -603 |
Matrix_517 | ERF12 | Not available | Upstream | -551 |
| | | Upstream | -552 |
| | | Upstream | -808 |
Matrix_56 | BZIP17;BZIP28;BZIP49 | Not available | Upstream | -548 |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Upstream | -548 |
Motif_150 | RBCSCONSENSUS | rbcS general consensus sequence; AATCCAA or AATCCAAC | Upstream | -262 |
Motif_192 | BOXLCOREDCPAL | Consensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitro | Intron | 2852 |
Motif_193 | GLK1 | GLK transcription factors coordinate expression of the photosynthetic apparatus in Arabidopsis | Upstream | -158 |
| | | Upstream | -260 |
| | | Upstream | -511 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -604 |
Motif_195 | TATABOX4 | TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | Upstream | -1312 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Intron | 2850 |
Motif_254 | MYB46;MYB83 | MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes | Intron | 2852 |
Motif_274 | MYB1 binding site motif | Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein | Upstream | -263 |
Motif_292 | MYBPZM | Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes | Intron | 2851 |
| | | Upstream | -265 |
Motif_321 | TATABOX5 | TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis | Upstream | -951 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -549 |
Motif_342 | POLASIG1 | PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis | Upstream | -950 |
Motif_391 | REALPHALGLHCB21 | REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulation | Intron | 2853 |
| | | Upstream | -267 |
Motif_419 | MYB4 binding site motif | Not available | Intron | 2852 |
Motif_426 | MYB58;MYB63 | MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis | Intron | 2852 |
Motif_459 | SORLIP1 | Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Upstream | -562 |
Motif_484 | RAV1-B binding site motif | Binding consensus sequence of an Arabidopsis transcription factor, RAV1; RAV1 specifically binds to DNA with bipartite sequence motifs of RAV1-A (CAACA) and RAV1-B (CACCTG); RAV1 protein contain AP2-like and B3-like domains; The AP2-like and B3-like domains recognize the CAACA and CACCTG motifs, respectively; The expression level of RAV1 were relatively high in rosette leaves and roots; RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants | Upstream | -565 |
Motif_49 | TATAPVTRNALEU | TATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP) | Upstream | -1312 |
Motif_503 | EECCRCAH1 | EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1 | Intron | 2793 |
Motif_563 | PYRIMIDINEBOXOSRAMY1A | Pyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this site | Intron | 2833 |
Motif_57 | ABREOSRAB21 | ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em gene | Upstream | -550 |
Motif_575 | TATABOX3 | TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene | Upstream | -1307 |
Motif_615 | MARTBOX | T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR) | Upstream | -946 |
| | | Upstream | -949 |
| | | Upstream | -951 |
Motif_618 | MYB1AT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis | Intron | 2854 |
Motif_645 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -604 |
Motif_666 | MYB binding site promoter | A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes | Intron | 2853 |