Matrix_101 | ERF5 | Not available | Upstream | -542 |
| | | Upstream | -543 |
| | | Upstream | -569 |
| | | Upstream | -570 |
| | | Upstream | -572 |
| | | Upstream | -573 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -570 |
| | | Upstream | -571 |
Matrix_119 | RRTF1 | Not available | Upstream | -541 |
| | | Upstream | -542 |
| | | Upstream | -568 |
| | | Upstream | -569 |
| | | Upstream | -571 |
| | | Upstream | -572 |
Matrix_128 | TGA2 | Not available | Upstream | -558 |
| | | Upstream | -567 |
Matrix_138 | RRTF1 | Not available | Upstream | -541 |
| | | Upstream | -542 |
| | | Upstream | -571 |
| | | Upstream | -572 |
Matrix_146 | ORA47 | Not available | Upstream | -542 |
| | | Upstream | -543 |
| | | Upstream | -572 |
| | | Upstream | -573 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -542 |
| | | Upstream | -543 |
| | | Upstream | -569 |
| | | Upstream | -570 |
| | | Upstream | -572 |
| | | Upstream | -573 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -543 |
| | | Upstream | -544 |
| | | Upstream | -570 |
| | | Upstream | -571 |
| | | Upstream | -573 |
| | | Upstream | -574 |
Matrix_165 | KNAT1 | Not available | Upstream | -568 |
| | | Upstream | -569 |
Matrix_166 | TGA4 | Not available | Upstream | -558 |
| | | Upstream | -567 |
Matrix_179 | AtMYB84;MYB36;MYB68;O49746_ARATH | Not available | Upstream | -544 |
Matrix_183 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -821 |
Matrix_186 | FHY3 | Not available | Upstream | -820 |
Matrix_190 | ATERF1 | Not available | Upstream | -543 |
| | | Upstream | -544 |
| | | Upstream | -570 |
| | | Upstream | -571 |
| | | Upstream | -573 |
| | | Upstream | -574 |
Matrix_224 | ERF1 | Not available | Upstream | -541 |
| | | Upstream | -542 |
| | | Upstream | -544 |
| | | Upstream | -545 |
| | | Upstream | -571 |
| | | Upstream | -572 |
Matrix_234 | RAP2.3 | Not available | Upstream | -542 |
| | | Upstream | -543 |
| | | Upstream | -569 |
| | | Upstream | -570 |
| | | Upstream | -572 |
| | | Upstream | -573 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -543 |
| | | Upstream | -544 |
| | | Upstream | -573 |
| | | Upstream | -574 |
Matrix_252 | RAP2.6 | Not available | Upstream | -542 |
| | | Upstream | -543 |
| | | Upstream | -569 |
| | | Upstream | -570 |
| | | Upstream | -572 |
| | | Upstream | -573 |
Matrix_256 | IXR11;KNAT5;KNAT4;KNAT3 | Not available | Upstream | -567 |
Matrix_261 | ATERF-1 | Not available | Upstream | -542 |
| | | Upstream | -543 |
| | | Upstream | -569 |
| | | Upstream | -570 |
| | | Upstream | -572 |
| | | Upstream | -573 |
Matrix_272 | DEAR4 | Not available | Upstream | -542 |
| | | Upstream | -543 |
| | | Upstream | -572 |
| | | Upstream | -573 |
Matrix_287 | ERF2 | Not available | Upstream | -542 |
| | | Upstream | -543 |
| | | Upstream | -569 |
| | | Upstream | -570 |
| | | Upstream | -572 |
| | | Upstream | -573 |
Matrix_288 | RAP2.3 | Not available | Upstream | -541 |
| | | Upstream | -542 |
| | | Upstream | -571 |
| | | Upstream | -572 |
Matrix_295 | ERF1 | Not available | Upstream | -542 |
| | | Upstream | -572 |
Matrix_311 | TGA1 | Not available | Upstream | -558 |
| | | Upstream | -567 |
Matrix_321 | HRD | Not available | Upstream | -542 |
| | | Upstream | -572 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -541 |
| | | Upstream | -542 |
| | | Upstream | -568 |
| | | Upstream | -569 |
| | | Upstream | -571 |
| | | Upstream | -572 |
Matrix_334 | AT3G23230 | Not available | Upstream | -543 |
| | | Upstream | -544 |
| | | Upstream | -573 |
| | | Upstream | -574 |
Matrix_343 | AT2G33710 | Not available | Upstream | -542 |
| | | Upstream | -543 |
| | | Upstream | -569 |
| | | Upstream | -570 |
| | | Upstream | -572 |
| | | Upstream | -573 |
Matrix_344 | ATERF15;AT4G18450 | Not available | Upstream | -542 |
| | | Upstream | -543 |
| | | Upstream | -572 |
| | | Upstream | -573 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -541 |
| | | Upstream | -542 |
| | | Upstream | -568 |
| | | Upstream | -569 |
| | | Upstream | -571 |
| | | Upstream | -572 |
Matrix_360 | ORA59 | Not available | Upstream | -542 |
| | | Upstream | -543 |
| | | Upstream | -572 |
| | | Upstream | -573 |
Matrix_363 | RAP2.3 | Not available | Upstream | -541 |
| | | Upstream | -542 |
| | | Upstream | -571 |
| | | Upstream | -572 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -542 |
| | | Upstream | -543 |
| | | Upstream | -572 |
| | | Upstream | -573 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -542 |
| | | Upstream | -543 |
| | | Upstream | -572 |
| | | Upstream | -573 |
Matrix_378 | ATERF1 | Not available | Upstream | -542 |
| | | Upstream | -543 |
| | | Upstream | -569 |
| | | Upstream | -570 |
| | | Upstream | -572 |
| | | Upstream | -573 |
Matrix_385 | DEAR4 | Not available | Upstream | -568 |
| | | Upstream | -569 |
Matrix_394 | DREB_U | Not available | Upstream | -568 |
Matrix_396 | AP3 | Not available | Upstream | -136 |
Matrix_399 | TGA1 | Not available | Upstream | -566 |
Matrix_406 | ATERF-7 | Not available | Upstream | -540 |
| | | Upstream | -541 |
| | | Upstream | -567 |
| | | Upstream | -568 |
| | | Upstream | -570 |
| | | Upstream | -571 |
Matrix_409 | DEAR3 | Not available | Upstream | -541 |
| | | Upstream | -542 |
| | | Upstream | -571 |
| | | Upstream | -572 |
Matrix_418 | KNAT6;KNAT2 | Not available | Upstream | -567 |
| | | Upstream | -568 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -543 |
| | | Upstream | -544 |
| | | Upstream | -573 |
| | | Upstream | -574 |
Matrix_448 | ATERF6 | Not available | Upstream | -541 |
| | | Upstream | -571 |
Matrix_45 | DRN | Not available | Upstream | -542 |
| | | Upstream | -543 |
| | | Upstream | -569 |
| | | Upstream | -570 |
| | | Upstream | -572 |
| | | Upstream | -573 |
Matrix_454 | AT1G77200;ATERF38;AT4G16750;AT5G52020 | Not available | Upstream | -541 |
| | | Upstream | -542 |
| | | Upstream | -568 |
| | | Upstream | -569 |
| | | Upstream | -571 |
| | | Upstream | -572 |
Matrix_462 | ATERF-8 | Not available | Upstream | -540 |
| | | Upstream | -541 |
| | | Upstream | -567 |
| | | Upstream | -568 |
| | | Upstream | -570 |
| | | Upstream | -571 |
Matrix_473 | RRTF1 | Not available | Upstream | -542 |
| | | Upstream | -543 |
| | | Upstream | -569 |
| | | Upstream | -570 |
| | | Upstream | -572 |
| | | Upstream | -573 |
Matrix_484 | ATERF13 | Not available | Upstream | -542 |
| | | Upstream | -543 |
| | | Upstream | -572 |
| | | Upstream | -573 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -542 |
| | | Upstream | -543 |
| | | Upstream | -569 |
| | | Upstream | -570 |
| | | Upstream | -572 |
| | | Upstream | -573 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -541 |
| | | Upstream | -542 |
| | | Upstream | -568 |
| | | Upstream | -569 |
| | | Upstream | -571 |
| | | Upstream | -572 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -543 |
| | | Upstream | -544 |
| | | Upstream | -570 |
| | | Upstream | -571 |
| | | Upstream | -573 |
| | | Upstream | -574 |
Matrix_517 | ERF12 | Not available | Upstream | -542 |
| | | Upstream | -543 |
| | | Upstream | -572 |
| | | Upstream | -573 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -541 |
| | | Upstream | -542 |
| | | Upstream | -544 |
| | | Upstream | -545 |
| | | Upstream | -571 |
| | | Upstream | -572 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -543 |
| | | Upstream | -544 |
| | | Upstream | -573 |
| | | Upstream | -574 |
Matrix_91 | CRF3 | Not available | Upstream | -542 |
| | | Upstream | -543 |
| | | Upstream | -569 |
| | | Upstream | -570 |
| | | Upstream | -572 |
| | | Upstream | -573 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -240 |
| | | Upstream | -822 |
| | | Upstream | -1977 |
Motif_292 | MYBPZM | Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes | Upstream | -89 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -543 |
| | | Upstream | -573 |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -822 |
| | | Upstream | -1978 |
Motif_353 | HEXAMERATH4 | hexamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 gene | Upstream | -563 |
Motif_365 | ARF1 binding site motif | ARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factors | Upstream | -827 |
Motif_391 | REALPHALGLHCB21 | REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulation | Upstream | -91 |
Motif_536 | TBOXATGAPB | Tbox found in the Arabidopsis thaliana GAPB gene promoter; Located between -94 and -89 (T1) and also between -84 and -79 (T2); Mutations in the Tbox resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana | Upstream | -372 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -260 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Upstream | -260 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -344 |
| | | Upstream | -346 |
| | | Upstream | -348 |
| | | Upstream | -350 |