View conserved binding sites


Gene
CM00024G00710
Description
protein phosphatase BSL2 homolog
Alias
MELO3C015041;MELO3C015041T1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-542
Upstream-543
Upstream-569
Upstream-570
Upstream-572
Upstream-573
Matrix_110ATABI4;AT3G57600Not availableUpstream-570
Upstream-571
Matrix_119RRTF1Not availableUpstream-541
Upstream-542
Upstream-568
Upstream-569
Upstream-571
Upstream-572
Matrix_128TGA2Not availableUpstream-558
Upstream-567
Matrix_138RRTF1Not availableUpstream-541
Upstream-542
Upstream-571
Upstream-572
Matrix_146ORA47Not availableUpstream-542
Upstream-543
Upstream-572
Upstream-573
Matrix_147ERF3;AT1G80580Not availableUpstream-542
Upstream-543
Upstream-569
Upstream-570
Upstream-572
Upstream-573
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-543
Upstream-544
Upstream-570
Upstream-571
Upstream-573
Upstream-574
Matrix_165KNAT1Not availableUpstream-568
Upstream-569
Matrix_166TGA4Not availableUpstream-558
Upstream-567
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableUpstream-544
Matrix_183BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-821
Matrix_186FHY3Not availableUpstream-820
Matrix_190ATERF1Not availableUpstream-543
Upstream-544
Upstream-570
Upstream-571
Upstream-573
Upstream-574
Matrix_224ERF1Not availableUpstream-541
Upstream-542
Upstream-544
Upstream-545
Upstream-571
Upstream-572
Matrix_234RAP2.3Not availableUpstream-542
Upstream-543
Upstream-569
Upstream-570
Upstream-572
Upstream-573
Matrix_243RAP2.12;RAP2.2Not availableUpstream-543
Upstream-544
Upstream-573
Upstream-574
Matrix_252RAP2.6Not availableUpstream-542
Upstream-543
Upstream-569
Upstream-570
Upstream-572
Upstream-573
Matrix_256IXR11;KNAT5;KNAT4;KNAT3Not availableUpstream-567
Matrix_261ATERF-1Not availableUpstream-542
Upstream-543
Upstream-569
Upstream-570
Upstream-572
Upstream-573
Matrix_272DEAR4Not availableUpstream-542
Upstream-543
Upstream-572
Upstream-573
Matrix_287ERF2Not availableUpstream-542
Upstream-543
Upstream-569
Upstream-570
Upstream-572
Upstream-573
Matrix_288RAP2.3Not availableUpstream-541
Upstream-542
Upstream-571
Upstream-572
Matrix_295ERF1Not availableUpstream-542
Upstream-572
Matrix_311TGA1Not availableUpstream-558
Upstream-567
Matrix_321HRDNot availableUpstream-542
Upstream-572
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-541
Upstream-542
Upstream-568
Upstream-569
Upstream-571
Upstream-572
Matrix_334AT3G23230Not availableUpstream-543
Upstream-544
Upstream-573
Upstream-574
Matrix_343AT2G33710Not availableUpstream-542
Upstream-543
Upstream-569
Upstream-570
Upstream-572
Upstream-573
Matrix_344ATERF15;AT4G18450Not availableUpstream-542
Upstream-543
Upstream-572
Upstream-573
Matrix_355ERF10;ERF11Not availableUpstream-541
Upstream-542
Upstream-568
Upstream-569
Upstream-571
Upstream-572
Matrix_360ORA59Not availableUpstream-542
Upstream-543
Upstream-572
Upstream-573
Matrix_363RAP2.3Not availableUpstream-541
Upstream-542
Upstream-571
Upstream-572
Matrix_374AT5G07580;AT5G61590Not availableUpstream-542
Upstream-543
Upstream-572
Upstream-573
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-542
Upstream-543
Upstream-572
Upstream-573
Matrix_378ATERF1Not availableUpstream-542
Upstream-543
Upstream-569
Upstream-570
Upstream-572
Upstream-573
Matrix_385DEAR4Not availableUpstream-568
Upstream-569
Matrix_394DREB_UNot availableUpstream-568
Matrix_396AP3Not availableUpstream-136
Matrix_399TGA1Not availableUpstream-566
Matrix_406ATERF-7Not availableUpstream-540
Upstream-541
Upstream-567
Upstream-568
Upstream-570
Upstream-571
Matrix_409DEAR3Not availableUpstream-541
Upstream-542
Upstream-571
Upstream-572
Matrix_418KNAT6;KNAT2Not availableUpstream-567
Upstream-568
Matrix_426CRF1;CRF2Not availableUpstream-543
Upstream-544
Upstream-573
Upstream-574
Matrix_448ATERF6Not availableUpstream-541
Upstream-571
Matrix_45DRNNot availableUpstream-542
Upstream-543
Upstream-569
Upstream-570
Upstream-572
Upstream-573
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-541
Upstream-542
Upstream-568
Upstream-569
Upstream-571
Upstream-572
Matrix_462ATERF-8Not availableUpstream-540
Upstream-541
Upstream-567
Upstream-568
Upstream-570
Upstream-571
Matrix_473RRTF1Not availableUpstream-542
Upstream-543
Upstream-569
Upstream-570
Upstream-572
Upstream-573
Matrix_484ATERF13Not availableUpstream-542
Upstream-543
Upstream-572
Upstream-573
Matrix_493AT1G22985;AT1G71130Not availableUpstream-542
Upstream-543
Upstream-569
Upstream-570
Upstream-572
Upstream-573
Matrix_50ATERF14;AT5G43410Not availableUpstream-541
Upstream-542
Upstream-568
Upstream-569
Upstream-571
Upstream-572
Matrix_506DRNL;ATERF-4Not availableUpstream-543
Upstream-544
Upstream-570
Upstream-571
Upstream-573
Upstream-574
Matrix_517ERF12Not availableUpstream-542
Upstream-543
Upstream-572
Upstream-573
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-541
Upstream-542
Upstream-544
Upstream-545
Upstream-571
Upstream-572
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-543
Upstream-544
Upstream-573
Upstream-574
Matrix_91CRF3Not availableUpstream-542
Upstream-543
Upstream-569
Upstream-570
Upstream-572
Upstream-573
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-240
Upstream-822
Upstream-1977
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-89
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-543
Upstream-573
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-822
Upstream-1978
Motif_353HEXAMERATH4hexamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 geneUpstream-563
Motif_365ARF1 binding site motifARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factorsUpstream-827
Motif_391REALPHALGLHCB21REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulationUpstream-91
Motif_536TBOXATGAPBTbox found in the Arabidopsis thaliana GAPB gene promoter; Located between -94 and -89 (T1) and also between -84 and -79 (T2); Mutations in the Tbox resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thalianaUpstream-372
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-260
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-260
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-344
Upstream-346
Upstream-348
Upstream-350