Matrix_101 | ERF5 | Not available | Upstream | -520 |
Matrix_119 | RRTF1 | Not available | Upstream | -519 |
Matrix_138 | RRTF1 | Not available | Upstream | -519 |
Matrix_146 | ORA47 | Not available | Upstream | -520 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -520 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -521 |
Matrix_190 | ATERF1 | Not available | Upstream | -362 |
| | | Upstream | -521 |
Matrix_224 | ERF1 | Not available | Upstream | -519 |
Matrix_234 | RAP2.3 | Not available | Upstream | -520 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -521 |
Matrix_252 | RAP2.6 | Not available | Upstream | -520 |
Matrix_261 | ATERF-1 | Not available | Upstream | -520 |
Matrix_272 | DEAR4 | Not available | Upstream | -520 |
Matrix_287 | ERF2 | Not available | Upstream | -520 |
Matrix_288 | RAP2.3 | Not available | Upstream | -519 |
Matrix_295 | ERF1 | Not available | Upstream | -520 |
Matrix_321 | HRD | Not available | Upstream | -520 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -519 |
Matrix_334 | AT3G23230 | Not available | Upstream | -521 |
Matrix_343 | AT2G33710 | Not available | Upstream | -520 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -519 |
Matrix_360 | ORA59 | Not available | Upstream | -520 |
Matrix_363 | RAP2.3 | Not available | Upstream | -519 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -520 |
Matrix_378 | ATERF1 | Not available | Upstream | -520 |
Matrix_401 | MYB55 | Not available | Upstream | -522 |
| | | Upstream | -523 |
Matrix_406 | ATERF-7 | Not available | Upstream | -518 |
Matrix_409 | DEAR3 | Not available | Upstream | -519 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -521 |
Matrix_45 | DRN | Not available | Upstream | -520 |
Matrix_452 | MYB46 | Not available | Upstream | -522 |
| | | Upstream | -526 |
Matrix_462 | ATERF-8 | Not available | Upstream | -518 |
Matrix_473 | RRTF1 | Not available | Upstream | -520 |
Matrix_484 | ATERF13 | Not available | Upstream | -520 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -520 |
Matrix_496 | ATMYB15 | Not available | Upstream | -522 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -519 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -521 |
Matrix_517 | ERF12 | Not available | Upstream | -520 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -519 |
Matrix_84 | AtGRF6 | Not available | Upstream | -371 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -521 |
Matrix_91 | CRF3 | Not available | Upstream | -520 |
Motif_155 | NODCON1GM | One of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodules | Upstream | -168 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -520 |
Motif_365 | ARF1 binding site motif | ARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factors | Upstream | -100 |
Motif_536 | TBOXATGAPB | Tbox found in the Arabidopsis thaliana GAPB gene promoter; Located between -94 and -89 (T1) and also between -84 and -79 (T2); Mutations in the Tbox resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana | Upstream | -175 |
Motif_562 | -300CORE | TGTAAAG core motif in -300 elements of alpha-zein genes of maize; -300 element core; prolamin box; P-box; Binds with P-box binding factor (PBF); Binds with BPBF (Barley PBF); PBF is a DNA-binding protein of the DOF class of transcription factors | Upstream | -170 |
Motif_591 | CBFHV | Binding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs) | Upstream | -146 |
Motif_615 | MARTBOX | T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR) | Upstream | -699 |
| | | Upstream | -700 |
| | | Upstream | -701 |