Matrix_101 | ERF5 | Not available | Upstream | -215 |
| | | Upstream | -216 |
| | | Upstream | -217 |
| | | Upstream | -218 |
| | | Upstream | -219 |
| | | Upstream | -299 |
Matrix_119 | RRTF1 | Not available | Upstream | -214 |
Matrix_138 | RRTF1 | Not available | Upstream | -214 |
Matrix_146 | ORA47 | Not available | Upstream | -215 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -215 |
| | | Upstream | -216 |
| | | Upstream | -218 |
| | | Upstream | -219 |
| | | Upstream | -299 |
Matrix_154 | AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130 | Not available | Upstream | -213 |
| | | Upstream | -214 |
| | | Upstream | -297 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -216 |
| | | Upstream | -217 |
| | | Upstream | -300 |
Matrix_190 | ATERF1 | Not available | Upstream | -215 |
| | | Upstream | -216 |
| | | Upstream | -217 |
| | | Upstream | -300 |
Matrix_224 | ERF1 | Not available | Upstream | -214 |
| | | Upstream | -215 |
| | | Upstream | -217 |
| | | Upstream | -218 |
| | | Upstream | -298 |
Matrix_234 | RAP2.3 | Not available | Upstream | -215 |
| | | Upstream | -216 |
| | | Upstream | -299 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -216 |
| | | Upstream | -217 |
| | | Upstream | -219 |
| | | Upstream | -220 |
| | | Upstream | -300 |
Matrix_252 | RAP2.6 | Not available | Upstream | -215 |
| | | Upstream | -216 |
| | | Upstream | -299 |
Matrix_261 | ATERF-1 | Not available | Upstream | -215 |
| | | Upstream | -216 |
| | | Upstream | -218 |
| | | Upstream | -219 |
| | | Upstream | -299 |
Matrix_272 | DEAR4 | Not available | Upstream | -215 |
| | | Upstream | -216 |
| | | Upstream | -299 |
Matrix_277 | RAP2.6 | Not available | Upstream | -217 |
| | | Upstream | -218 |
Matrix_287 | ERF2 | Not available | Upstream | -215 |
| | | Upstream | -216 |
| | | Upstream | -218 |
| | | Upstream | -219 |
| | | Upstream | -299 |
Matrix_288 | RAP2.3 | Not available | Upstream | -214 |
Matrix_295 | ERF1 | Not available | Upstream | -215 |
| | | Upstream | -216 |
| | | Upstream | -218 |
| | | Upstream | -219 |
| | | Upstream | -299 |
Matrix_321 | HRD | Not available | Upstream | -215 |
| | | Upstream | -216 |
| | | Upstream | -218 |
| | | Upstream | -219 |
| | | Upstream | -299 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -214 |
| | | Upstream | -215 |
| | | Upstream | -217 |
| | | Upstream | -218 |
| | | Upstream | -298 |
Matrix_334 | AT3G23230 | Not available | Upstream | -216 |
| | | Upstream | -217 |
| | | Upstream | -219 |
| | | Upstream | -220 |
| | | Upstream | -300 |
Matrix_343 | AT2G33710 | Not available | Upstream | -215 |
| | | Upstream | -216 |
| | | Upstream | -218 |
| | | Upstream | -219 |
| | | Upstream | -299 |
Matrix_344 | ATERF15;AT4G18450 | Not available | Upstream | -215 |
| | | Upstream | -216 |
| | | Upstream | -218 |
| | | Upstream | -219 |
| | | Upstream | -299 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -214 |
| | | Upstream | -215 |
| | | Upstream | -217 |
| | | Upstream | -218 |
| | | Upstream | -298 |
Matrix_356 | PRR5 | Not available | Upstream | -1497 |
Matrix_360 | ORA59 | Not available | Upstream | -215 |
| | | Upstream | -216 |
| | | Upstream | -218 |
| | | Upstream | -219 |
| | | Upstream | -299 |
Matrix_363 | RAP2.3 | Not available | Upstream | -214 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -215 |
| | | Upstream | -216 |
| | | Upstream | -218 |
| | | Upstream | -219 |
| | | Upstream | -299 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -215 |
| | | Upstream | -216 |
| | | Upstream | -218 |
| | | Upstream | -219 |
| | | Upstream | -299 |
Matrix_378 | ATERF1 | Not available | Upstream | -215 |
| | | Upstream | -216 |
| | | Upstream | -218 |
| | | Upstream | -219 |
| | | Upstream | -299 |
Matrix_387 | ORA47 | Not available | Upstream | -213 |
Matrix_39 | AP1 | Not available | Upstream | -222 |
Matrix_395 | AT1G19210;ORA47;AT4G31060;AT5G21960 | Not available | Upstream | -214 |
| | | Upstream | -215 |
| | | Upstream | -298 |
Matrix_405 | DREB2C | Not available | Upstream | -216 |
| | | Upstream | -217 |
| | | Upstream | -219 |
| | | Upstream | -220 |
Matrix_406 | ATERF-7 | Not available | Upstream | -213 |
| | | Upstream | -214 |
| | | Upstream | -216 |
| | | Upstream | -217 |
| | | Upstream | -297 |
Matrix_409 | DEAR3 | Not available | Upstream | -214 |
| | | Upstream | -215 |
| | | Upstream | -298 |
| | | Upstream | -301 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -216 |
| | | Upstream | -217 |
| | | Upstream | -219 |
| | | Upstream | -220 |
| | | Upstream | -300 |
Matrix_433 | ATERF1 | Not available | Upstream | -1916 |
Matrix_448 | ATERF6 | Not available | Upstream | -217 |
| | | Upstream | -218 |
Matrix_45 | DRN | Not available | Upstream | -215 |
| | | Upstream | -216 |
| | | Upstream | -218 |
| | | Upstream | -219 |
| | | Upstream | -299 |
Matrix_454 | AT1G77200;ATERF38;AT4G16750;AT5G52020 | Not available | Upstream | -217 |
| | | Upstream | -218 |
Matrix_462 | ATERF-8 | Not available | Upstream | -213 |
| | | Upstream | -214 |
| | | Upstream | -216 |
| | | Upstream | -217 |
| | | Upstream | -297 |
Matrix_473 | RRTF1 | Not available | Upstream | -215 |
| | | Upstream | -216 |
| | | Upstream | -299 |
Matrix_482 | AT2G25650;AT4G00270 | Not available | Upstream | -220 |
| | | Upstream | -221 |
Matrix_484 | ATERF13 | Not available | Upstream | -215 |
| | | Upstream | -216 |
| | | Upstream | -218 |
| | | Upstream | -219 |
| | | Upstream | -299 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -215 |
| | | Upstream | -216 |
| | | Upstream | -218 |
| | | Upstream | -219 |
| | | Upstream | -299 |
Matrix_5 | AT5G51190;ERF104 | Not available | Upstream | -218 |
| | | Upstream | -219 |
| | | Upstream | -1917 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -214 |
| | | Upstream | -215 |
| | | Upstream | -217 |
| | | Upstream | -218 |
| | | Upstream | -298 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -216 |
| | | Upstream | -217 |
| | | Upstream | -219 |
| | | Upstream | -220 |
| | | Upstream | -300 |
Matrix_514 | DYT1 | Regulation of the Arabidopsis anther transcriptome by DYT1 for pollen development | Upstream | -382 |
Matrix_517 | ERF12 | Not available | Upstream | -215 |
| | | Upstream | -216 |
| | | Upstream | -299 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -214 |
| | | Upstream | -215 |
| | | Upstream | -217 |
| | | Upstream | -218 |
| | | Upstream | -298 |
Matrix_59 | AT4G00238;AT4G00250 | Not available | Upstream | -217 |
| | | Upstream | -218 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -216 |
| | | Upstream | -217 |
| | | Upstream | -219 |
| | | Upstream | -220 |
| | | Upstream | -300 |
Matrix_91 | CRF3 | Not available | Upstream | -215 |
| | | Upstream | -216 |
| | | Upstream | -218 |
| | | Upstream | -219 |
| | | Upstream | -299 |
Motif_104 | CAREOSREP1 | CAREs (CAACTC regulatory elements) found in the promoter region of a cystein proteinase (REP-1) gene in rice | Upstream | -108 |
Motif_131 | P1BS | PHR1-binding sequence found in the upstream regions of phosphate starvation responsive genes from several plant species; phr1 (phosphate starvation response 1) gene codes for PHR1 protein related to PSR1 gene in C. reinhardtii | Upstream | -471 |
Motif_145 | MYCATERD1 | MYC recognition sequence (from -466 to -461) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis; NAC protein bound specifically to the CATGTG motif; NAC protein bound specifically to the CATGTG motif | Upstream | -362 |
| | | Upstream | -372 |
Motif_165 | AP3SV40 | AP-3 binding site consensus sequence in enhancer regions of SV40, MMTV, MLV, IL2 | Upstream | -125 |
| | | Upstream | -358 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -385 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -362 |
| | | Upstream | -372 |
Motif_305 | SP1SV40 | SP-1 binding site (GC box) in enhancer regions of SV40 and human metallothionein IIA (hMT IIA) | Upstream | -215 |
| | | Upstream | -298 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -216 |
| | | Upstream | -219 |
| | | Upstream | -299 |
Motif_447 | AtMYC2 BS in RD22;PIF4 | Binding site for MYC (rd22BP1) in Arabidopsis dehydration-resposive gene, rd22; MYC binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -200 of rd22 gene; Also MYB at ca. -141 of rd22 gene; See also MYBATRD22; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -362 |
| | | Upstream | -372 |
Motif_590 | MYB3 binding site motif | Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses | Upstream | -1653 |
| | | Upstream | -1696 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -1499 |
Motif_72 | GADOWNAT | Sequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABRE | Upstream | -1499 |