Matrix_101 | ERF5 | Not available | Upstream | -748 |
| | | Upstream | -749 |
| | | Upstream | -751 |
| | | Upstream | -752 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -748 |
| | | Upstream | -749 |
| | | Upstream | -750 |
| | | Upstream | -751 |
| | | Upstream | -754 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -692 |
Matrix_119 | RRTF1 | Not available | Upstream | -749 |
| | | Upstream | -750 |
| | | Upstream | -752 |
| | | Upstream | -753 |
Matrix_138 | RRTF1 | Not available | Upstream | -749 |
| | | Upstream | -750 |
| | | Upstream | -752 |
| | | Upstream | -753 |
Matrix_146 | ORA47 | Not available | Upstream | -748 |
| | | Upstream | -749 |
| | | Upstream | -751 |
| | | Upstream | -752 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -748 |
| | | Upstream | -750 |
| | | Upstream | -751 |
| | | Upstream | -753 |
| | | Upstream | -754 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -749 |
| | | Upstream | -752 |
Matrix_190 | ATERF1 | Not available | Upstream | -748 |
| | | Upstream | -749 |
| | | Upstream | -750 |
| | | Upstream | -751 |
| | | Upstream | -752 |
Matrix_194 | HYH;HY5 | Not available | Upstream | -692 |
Matrix_214 | AP1 | Not available | Upstream | -693 |
Matrix_224 | ERF1 | Not available | Upstream | -749 |
| | | Upstream | -750 |
| | | Upstream | -752 |
| | | Upstream | -753 |
| | | Upstream | -773 |
Matrix_234 | RAP2.3 | Not available | Upstream | -748 |
| | | Upstream | -749 |
| | | Upstream | -750 |
| | | Upstream | -751 |
| | | Upstream | -752 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -749 |
| | | Upstream | -752 |
Matrix_244 | DREB2C | Not available | Upstream | -752 |
Matrix_252 | RAP2.6 | Not available | Upstream | -748 |
| | | Upstream | -749 |
| | | Upstream | -750 |
| | | Upstream | -751 |
| | | Upstream | -752 |
Matrix_261 | ATERF-1 | Not available | Upstream | -749 |
| | | Upstream | -750 |
| | | Upstream | -752 |
| | | Upstream | -753 |
Matrix_272 | DEAR4 | Not available | Upstream | -748 |
| | | Upstream | -749 |
| | | Upstream | -751 |
| | | Upstream | -752 |
Matrix_277 | RAP2.6 | Not available | Upstream | -752 |
Matrix_287 | ERF2 | Not available | Upstream | -748 |
| | | Upstream | -749 |
| | | Upstream | -751 |
| | | Upstream | -752 |
Matrix_288 | RAP2.3 | Not available | Upstream | -747 |
| | | Upstream | -749 |
| | | Upstream | -750 |
| | | Upstream | -752 |
| | | Upstream | -753 |
Matrix_295 | ERF1 | Not available | Upstream | -750 |
| | | Upstream | -751 |
| | | Upstream | -753 |
| | | Upstream | -754 |
Matrix_321 | HRD | Not available | Upstream | -749 |
| | | Upstream | -752 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -749 |
| | | Upstream | -750 |
| | | Upstream | -752 |
| | | Upstream | -753 |
Matrix_334 | AT3G23230 | Not available | Upstream | -749 |
| | | Upstream | -750 |
| | | Upstream | -752 |
| | | Upstream | -753 |
Matrix_343 | AT2G33710 | Not available | Upstream | -748 |
| | | Upstream | -749 |
| | | Upstream | -751 |
| | | Upstream | -752 |
Matrix_344 | ATERF15;AT4G18450 | Not available | Upstream | -750 |
Matrix_345 | POC1 | Not available | Upstream | -692 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -749 |
| | | Upstream | -750 |
| | | Upstream | -752 |
| | | Upstream | -753 |
Matrix_360 | ORA59 | Not available | Upstream | -750 |
| | | Upstream | -753 |
Matrix_363 | RAP2.3 | Not available | Upstream | -749 |
| | | Upstream | -750 |
| | | Upstream | -752 |
| | | Upstream | -753 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -749 |
| | | Upstream | -750 |
| | | Upstream | -752 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -749 |
| | | Upstream | -750 |
| | | Upstream | -752 |
| | | Upstream | -753 |
Matrix_378 | ATERF1 | Not available | Upstream | -748 |
| | | Upstream | -749 |
| | | Upstream | -751 |
| | | Upstream | -752 |
Matrix_385 | DEAR4 | Not available | Upstream | -752 |
Matrix_394 | DREB_U | Not available | Upstream | -752 |
Matrix_405 | DREB2C | Not available | Upstream | -750 |
Matrix_406 | ATERF-7 | Not available | Upstream | -750 |
| | | Upstream | -751 |
| | | Upstream | -754 |
Matrix_409 | DEAR3 | Not available | Upstream | -749 |
| | | Upstream | -750 |
| | | Upstream | -752 |
| | | Upstream | -753 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -749 |
| | | Upstream | -750 |
| | | Upstream | -752 |
| | | Upstream | -753 |
Matrix_448 | ATERF6 | Not available | Upstream | -749 |
Matrix_45 | DRN | Not available | Upstream | -750 |
| | | Upstream | -751 |
| | | Upstream | -753 |
| | | Upstream | -754 |
Matrix_454 | AT1G77200;ATERF38;AT4G16750;AT5G52020 | Not available | Upstream | -749 |
| | | Upstream | -752 |
Matrix_462 | ATERF-8 | Not available | Upstream | -750 |
| | | Upstream | -751 |
| | | Upstream | -754 |
Matrix_473 | RRTF1 | Not available | Upstream | -748 |
| | | Upstream | -749 |
| | | Upstream | -751 |
| | | Upstream | -752 |
Matrix_484 | ATERF13 | Not available | Upstream | -750 |
| | | Upstream | -753 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -749 |
| | | Upstream | -750 |
| | | Upstream | -752 |
| | | Upstream | -753 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -749 |
| | | Upstream | -750 |
| | | Upstream | -752 |
| | | Upstream | -753 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -749 |
| | | Upstream | -750 |
| | | Upstream | -752 |
| | | Upstream | -753 |
Matrix_517 | ERF12 | Not available | Upstream | -748 |
| | | Upstream | -750 |
| | | Upstream | -751 |
| | | Upstream | -753 |
| | | Upstream | -754 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -749 |
| | | Upstream | -750 |
| | | Upstream | -752 |
| | | Upstream | -753 |
| | | Upstream | -773 |
Matrix_85 | SPL5 | Not available | Upstream | -553 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -748 |
| | | Upstream | -749 |
| | | Upstream | -750 |
| | | Upstream | -752 |
| | | Upstream | -753 |
Matrix_91 | CRF3 | Not available | Upstream | -749 |
| | | Upstream | -750 |
| | | Upstream | -752 |
| | | Upstream | -753 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Upstream | -845 |
| | | Upstream | -917 |
Motif_129 | GAGAGMGSA1 | GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNA | Upstream | -826 |
| | | Upstream | -828 |
| | | Upstream | -830 |
Motif_136 | SEF4MOTIFGM7S | SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4) | Upstream | -583 |
Motif_182 | MYB2CONSENSUSAT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22 | Upstream | -886 |
Motif_192 | BOXLCOREDCPAL | Consensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitro | Upstream | -702 |
Motif_193 | GLK1 | GLK transcription factors coordinate expression of the photosynthetic apparatus in Arabidopsis | Upstream | -943 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -697 |
| | | Upstream | -886 |
Motif_195 | TATABOX4 | TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | Upstream | -1667 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Upstream | -886 |
Motif_292 | MYBPZM | Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes | Upstream | -768 |
| | | Upstream | -1176 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -751 |
| | | Upstream | -754 |
Motif_336 | MYBMOUSE | Binding site for mouse c-myb protein | Upstream | -886 |
Motif_346 | SND1;VND6;VND7;NST1;NST2 | Global analysis of direct targets of secondary wall NAC master switches in Arabidopsis | Upstream | -913 |
Motif_370 | TATABOX2 | TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | Upstream | -1665 |
Motif_441 | GAGA8HVBKN3 | GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR | Upstream | -826 |
| | | Upstream | -828 |
| | | Upstream | -830 |
| | | Upstream | -832 |
Motif_49 | TATAPVTRNALEU | TATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP) | Upstream | -1666 |
Motif_503 | EECCRCAH1 | EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1 | Upstream | -933 |
Motif_591 | CBFHV | Binding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs) | Upstream | -153 |
Motif_615 | MARTBOX | T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR) | Upstream | -1519 |
| | | Upstream | -1520 |
| | | Upstream | -1521 |
| | | Upstream | -1522 |
| | | Upstream | -1523 |
| | | Upstream | -1524 |
Motif_645 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -697 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -727 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Upstream | -727 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -651 |
| | | Upstream | -653 |
| | | Upstream | -825 |
| | | Upstream | -827 |
| | | Upstream | -829 |
| | | Upstream | -831 |
| | | Upstream | -833 |
| | | Upstream | -835 |
| | | Upstream | -837 |
| | | Upstream | -839 |
Motif_83 | CIACADIANLELHC | Region necessary for circadian expression of tomato Lhc gene | Upstream | -930 |
Motif_85 | SORLIP5AT | one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Upstream | -846 |