View conserved binding sites


Gene
CM00006G00370
Description
Zinc finger protein
Alias
MELO3C005961;MELO3C005961T1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-748
Upstream-749
Upstream-751
Upstream-752
Matrix_110ATABI4;AT3G57600Not availableUpstream-748
Upstream-749
Upstream-750
Upstream-751
Upstream-754
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-692
Matrix_119RRTF1Not availableUpstream-749
Upstream-750
Upstream-752
Upstream-753
Matrix_138RRTF1Not availableUpstream-749
Upstream-750
Upstream-752
Upstream-753
Matrix_146ORA47Not availableUpstream-748
Upstream-749
Upstream-751
Upstream-752
Matrix_147ERF3;AT1G80580Not availableUpstream-748
Upstream-750
Upstream-751
Upstream-753
Upstream-754
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-749
Upstream-752
Matrix_190ATERF1Not availableUpstream-748
Upstream-749
Upstream-750
Upstream-751
Upstream-752
Matrix_194HYH;HY5Not availableUpstream-692
Matrix_214AP1Not availableUpstream-693
Matrix_224ERF1Not availableUpstream-749
Upstream-750
Upstream-752
Upstream-753
Upstream-773
Matrix_234RAP2.3Not availableUpstream-748
Upstream-749
Upstream-750
Upstream-751
Upstream-752
Matrix_243RAP2.12;RAP2.2Not availableUpstream-749
Upstream-752
Matrix_244DREB2CNot availableUpstream-752
Matrix_252RAP2.6Not availableUpstream-748
Upstream-749
Upstream-750
Upstream-751
Upstream-752
Matrix_261ATERF-1Not availableUpstream-749
Upstream-750
Upstream-752
Upstream-753
Matrix_272DEAR4Not availableUpstream-748
Upstream-749
Upstream-751
Upstream-752
Matrix_277RAP2.6Not availableUpstream-752
Matrix_287ERF2Not availableUpstream-748
Upstream-749
Upstream-751
Upstream-752
Matrix_288RAP2.3Not availableUpstream-747
Upstream-749
Upstream-750
Upstream-752
Upstream-753
Matrix_295ERF1Not availableUpstream-750
Upstream-751
Upstream-753
Upstream-754
Matrix_321HRDNot availableUpstream-749
Upstream-752
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-749
Upstream-750
Upstream-752
Upstream-753
Matrix_334AT3G23230Not availableUpstream-749
Upstream-750
Upstream-752
Upstream-753
Matrix_343AT2G33710Not availableUpstream-748
Upstream-749
Upstream-751
Upstream-752
Matrix_344ATERF15;AT4G18450Not availableUpstream-750
Matrix_345POC1Not availableUpstream-692
Matrix_355ERF10;ERF11Not availableUpstream-749
Upstream-750
Upstream-752
Upstream-753
Matrix_360ORA59Not availableUpstream-750
Upstream-753
Matrix_363RAP2.3Not availableUpstream-749
Upstream-750
Upstream-752
Upstream-753
Matrix_374AT5G07580;AT5G61590Not availableUpstream-749
Upstream-750
Upstream-752
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-749
Upstream-750
Upstream-752
Upstream-753
Matrix_378ATERF1Not availableUpstream-748
Upstream-749
Upstream-751
Upstream-752
Matrix_385DEAR4Not availableUpstream-752
Matrix_394DREB_UNot availableUpstream-752
Matrix_405DREB2CNot availableUpstream-750
Matrix_406ATERF-7Not availableUpstream-750
Upstream-751
Upstream-754
Matrix_409DEAR3Not availableUpstream-749
Upstream-750
Upstream-752
Upstream-753
Matrix_426CRF1;CRF2Not availableUpstream-749
Upstream-750
Upstream-752
Upstream-753
Matrix_448ATERF6Not availableUpstream-749
Matrix_45DRNNot availableUpstream-750
Upstream-751
Upstream-753
Upstream-754
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-749
Upstream-752
Matrix_462ATERF-8Not availableUpstream-750
Upstream-751
Upstream-754
Matrix_473RRTF1Not availableUpstream-748
Upstream-749
Upstream-751
Upstream-752
Matrix_484ATERF13Not availableUpstream-750
Upstream-753
Matrix_493AT1G22985;AT1G71130Not availableUpstream-749
Upstream-750
Upstream-752
Upstream-753
Matrix_50ATERF14;AT5G43410Not availableUpstream-749
Upstream-750
Upstream-752
Upstream-753
Matrix_506DRNL;ATERF-4Not availableUpstream-749
Upstream-750
Upstream-752
Upstream-753
Matrix_517ERF12Not availableUpstream-748
Upstream-750
Upstream-751
Upstream-753
Upstream-754
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-749
Upstream-750
Upstream-752
Upstream-753
Upstream-773
Matrix_85SPL5Not availableUpstream-553
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-748
Upstream-749
Upstream-750
Upstream-752
Upstream-753
Matrix_91CRF3Not availableUpstream-749
Upstream-750
Upstream-752
Upstream-753
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-845
Upstream-917
Motif_129GAGAGMGSA1GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNAUpstream-826
Upstream-828
Upstream-830
Motif_136SEF4MOTIFGM7SSEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)Upstream-583
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-886
Motif_192BOXLCOREDCPALConsensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitroUpstream-702
Motif_193GLK1GLK transcription factors coordinate expression of the photosynthetic apparatus in ArabidopsisUpstream-943
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-697
Upstream-886
Motif_195TATABOX4TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-1667
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-886
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-768
Upstream-1176
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-751
Upstream-754
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-886
Motif_346SND1;VND6;VND7;NST1;NST2Global analysis of direct targets of secondary wall NAC master switches in ArabidopsisUpstream-913
Motif_370TATABOX2TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-1665
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRUpstream-826
Upstream-828
Upstream-830
Upstream-832
Motif_49TATAPVTRNALEUTATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP)Upstream-1666
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Upstream-933
Motif_591CBFHVBinding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs)Upstream-153
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Upstream-1519
Upstream-1520
Upstream-1521
Upstream-1522
Upstream-1523
Upstream-1524
Motif_645BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-697
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-727
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-727
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-651
Upstream-653
Upstream-825
Upstream-827
Upstream-829
Upstream-831
Upstream-833
Upstream-835
Upstream-837
Upstream-839
Motif_83CIACADIANLELHCRegion necessary for circadian expression of tomato Lhc geneUpstream-930
Motif_85SORLIP5ATone of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-846