Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -393 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -430 |
Matrix_129 | ABF1 | Not available | Upstream | -426 |
Matrix_134 | ABF1 | Not available | Upstream | -426 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -425 |
Matrix_146 | ORA47 | Not available | Upstream | -395 |
| | | Downstream | 777 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -430 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -334 |
| | | Downstream | 773 |
| | | Downstream | 778 |
Matrix_171 | LBD3;LBD4 | Not available | Upstream | -394 |
Matrix_183 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Downstream | 816 |
| | | Downstream | 1127 |
Matrix_186 | FHY3 | Not available | Downstream | 816 |
| | | Downstream | 1127 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -429 |
Matrix_224 | ERF1 | Not available | Upstream | -337 |
Matrix_234 | RAP2.3 | Not available | Downstream | 777 |
Matrix_24 | POC1 | Not available | Upstream | -430 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -478 |
Matrix_287 | ERF2 | Not available | Upstream | -338 |
Matrix_288 | RAP2.3 | Not available | Downstream | 778 |
| | | Downstream | 1132 |
Matrix_295 | ERF1 | Not available | Upstream | -336 |
| | | Downstream | 776 |
| | | Downstream | 779 |
Matrix_301 | PIL5 | Not available | Upstream | -425 |
Matrix_306 | TGA1 | TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG | Upstream | -364 |
Matrix_321 | HRD | Not available | Upstream | -337 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Downstream | 775 |
| | | Downstream | 778 |
Matrix_334 | AT3G23230 | Not available | Upstream | -337 |
Matrix_344 | ATERF15;AT4G18450 | Not available | Downstream | 772 |
| | | Downstream | 776 |
| | | Downstream | 779 |
Matrix_355 | ERF10;ERF11 | Not available | Downstream | 775 |
| | | Downstream | 778 |
Matrix_356 | PRR5 | Not available | Upstream | -433 |
Matrix_360 | ORA59 | Not available | Upstream | -336 |
| | | Downstream | 776 |
| | | Downstream | 779 |
Matrix_363 | RAP2.3 | Not available | Upstream | -337 |
| | | Downstream | 778 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -337 |
| | | Downstream | 772 |
| | | Downstream | 775 |
| | | Downstream | 778 |
| | | Downstream | 779 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -394 |
Matrix_378 | ATERF1 | Not available | Upstream | -338 |
Matrix_399 | TGA1 | Not available | Upstream | -364 |
Matrix_403 | BZR1 | Not available | Upstream | -428 |
Matrix_406 | ATERF-7 | Not available | Upstream | -336 |
Matrix_409 | DEAR3 | Not available | Upstream | -394 |
Matrix_414 | AGL15 | Not available | Downstream | 964 |
Matrix_448 | ATERF6 | Not available | Downstream | 771 |
| | | Downstream | 775 |
| | | Downstream | 781 |
Matrix_45 | DRN | Not available | Upstream | -336 |
Matrix_457 | TGA2 | Not available | Upstream | -363 |
Matrix_462 | ATERF-8 | Not available | Downstream | 776 |
| | | Downstream | 779 |
Matrix_476 | bHLH115;bHLH34 | Not available | Downstream | 1128 |
Matrix_480 | BES1 | Not available | Upstream | -427 |
Matrix_484 | ATERF13 | Not available | Upstream | -336 |
| | | Downstream | 776 |
| | | Downstream | 779 |
Matrix_49 | FHY3/FAR1 | Not available | Downstream | 1124 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -337 |
Matrix_517 | ERF12 | Not available | Downstream | 779 |
| | | Downstream | 1133 |
| | | Downstream | 1136 |
Matrix_53 | MYC3 | Not available | Upstream | -428 |
Matrix_55 | PIF3 | Not available | Upstream | -427 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Downstream | 775 |
| | | Downstream | 778 |
| | | Downstream | 1135 |
Matrix_79 | FUS3 | Not available | Downstream | 976 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Downstream | 775 |
| | | Downstream | 778 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Downstream | 535 |
Motif_129 | GAGAGMGSA1 | GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNA | Upstream | -84 |
| | | Upstream | -82 |
Motif_136 | SEF4MOTIFGM7S | SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4) | Upstream | -612 |
Motif_17 | AUXRETGA1GMGH3 | TGA-box #1 in putative auxin-resonsive element (AUXRE) of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts | Upstream | -364 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -424 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -426 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -335 |
Motif_320 | AGCBOXNPGLB | AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box | Upstream | -336 |
Motif_342 | POLASIG1 | PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis | Downstream | 547 |
Motif_346 | SND1;VND6;VND7;NST1;NST2 | Global analysis of direct targets of secondary wall NAC master switches in Arabidopsis | Upstream | -375 |
| | | Upstream | -153 |
Motif_441 | GAGA8HVBKN3 | GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR | Upstream | -84 |
| | | Upstream | -82 |
| | | Upstream | -80 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -425 |
Motif_453 | HEXMOTIFTAH3H4 | hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding site | Upstream | -362 |
Motif_48 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Downstream | 983 |
Motif_530 | CPBCSPOR | The sequence critical for Cytokinin-enhanced Protein Binding in vitro, found in -490 to -340 of the promoter of the cucumber POR (NADPH-protochlorophyllide reductase) gene | Upstream | -99 |
Motif_552 | MRE1 | MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1 | Downstream | 974 |
Motif_563 | PYRIMIDINEBOXOSRAMY1A | Pyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this site | Downstream | 543 |
Motif_570 | POLASIG2 | PolyA signal; poly A signal found in rice alpha-amylase; -10 to -30 in the case of animal genes | Upstream | -609 |
Motif_576 | TGACGTVMAMY | TGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seeds | Upstream | -362 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Downstream | 538 |
Motif_689 | ANAC092 | NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in Arabidopsis | Upstream | -372 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -84 |
| | | Upstream | -82 |
| | | Upstream | -80 |
| | | Upstream | -78 |
| | | Upstream | -76 |
| | | Upstream | -74 |