View conserved binding sites


Gene
CM00001G07400
Description
Ethylene-responsive transcription factor
Alias
MELO3C002623;MELO3C002623T1
Binding siteNameDescriptionLocationPosition
Matrix_110ATABI4;AT3G57600Not availableUpstream-393
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-430
Matrix_129ABF1Not availableUpstream-426
Matrix_134ABF1Not availableUpstream-426
Matrix_145GBF4;AT5G44080Not availableUpstream-425
Matrix_146ORA47Not availableUpstream-395
Downstream777
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-430
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-334
Downstream773
Downstream778
Matrix_171LBD3;LBD4Not availableUpstream-394
Matrix_183BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaDownstream816
Downstream1127
Matrix_186FHY3Not availableDownstream816
Downstream1127
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-429
Matrix_224ERF1Not availableUpstream-337
Matrix_234RAP2.3Not availableDownstream777
Matrix_24POC1Not availableUpstream-430
Matrix_243RAP2.12;RAP2.2Not availableUpstream-478
Matrix_287ERF2Not availableUpstream-338
Matrix_288RAP2.3Not availableDownstream778
Downstream1132
Matrix_295ERF1Not availableUpstream-336
Downstream776
Downstream779
Matrix_301PIL5Not availableUpstream-425
Matrix_306TGA1TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGGUpstream-364
Matrix_321HRDNot availableUpstream-337
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableDownstream775
Downstream778
Matrix_334AT3G23230Not availableUpstream-337
Matrix_344ATERF15;AT4G18450Not availableDownstream772
Downstream776
Downstream779
Matrix_355ERF10;ERF11Not availableDownstream775
Downstream778
Matrix_356PRR5Not availableUpstream-433
Matrix_360ORA59Not availableUpstream-336
Downstream776
Downstream779
Matrix_363RAP2.3Not availableUpstream-337
Downstream778
Matrix_374AT5G07580;AT5G61590Not availableUpstream-337
Downstream772
Downstream775
Downstream778
Downstream779
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-394
Matrix_378ATERF1Not availableUpstream-338
Matrix_399TGA1Not availableUpstream-364
Matrix_403BZR1Not availableUpstream-428
Matrix_406ATERF-7Not availableUpstream-336
Matrix_409DEAR3Not availableUpstream-394
Matrix_414AGL15Not availableDownstream964
Matrix_448ATERF6Not availableDownstream771
Downstream775
Downstream781
Matrix_45DRNNot availableUpstream-336
Matrix_457TGA2Not availableUpstream-363
Matrix_462ATERF-8Not availableDownstream776
Downstream779
Matrix_476bHLH115;bHLH34Not availableDownstream1128
Matrix_480BES1Not availableUpstream-427
Matrix_484ATERF13Not availableUpstream-336
Downstream776
Downstream779
Matrix_49FHY3/FAR1Not availableDownstream1124
Matrix_50ATERF14;AT5G43410Not availableUpstream-337
Matrix_517ERF12Not availableDownstream779
Downstream1133
Downstream1136
Matrix_53MYC3Not availableUpstream-428
Matrix_55PIF3Not availableUpstream-427
Matrix_57WIN1;SHN3;SHN2Not availableDownstream775
Downstream778
Downstream1135
Matrix_79FUS3Not availableDownstream976
Matrix_86CRF5;CRF6;CRF4Not availableDownstream775
Downstream778
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxDownstream535
Motif_129GAGAGMGSA1GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNAUpstream-84
Upstream-82
Motif_136SEF4MOTIFGM7SSEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)Upstream-612
Motif_17AUXRETGA1GMGH3TGA-box #1 in putative auxin-resonsive element (AUXRE) of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extractsUpstream-364
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-424
Motif_244ABRE-like binding site motifNot availableUpstream-426
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-335
Motif_320AGCBOXNPGLBAGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC boxUpstream-336
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisDownstream547
Motif_346SND1;VND6;VND7;NST1;NST2Global analysis of direct targets of secondary wall NAC master switches in ArabidopsisUpstream-375
Upstream-153
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRUpstream-84
Upstream-82
Upstream-80
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-425
Motif_453HEXMOTIFTAH3H4hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding siteUpstream-362
Motif_48BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaDownstream983
Motif_530CPBCSPORThe sequence critical for Cytokinin-enhanced Protein Binding in vitro, found in -490 to -340 of the promoter of the cucumber POR (NADPH-protochlorophyllide reductase) geneUpstream-99
Motif_552MRE1MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1Downstream974
Motif_563PYRIMIDINEBOXOSRAMY1APyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this siteDownstream543
Motif_570POLASIG2PolyA signal; poly A signal found in rice alpha-amylase; -10 to -30 in the case of animal genesUpstream-609
Motif_576TGACGTVMAMYTGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seedsUpstream-362
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionDownstream538
Motif_689ANAC092NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in ArabidopsisUpstream-372
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-84
Upstream-82
Upstream-80
Upstream-78
Upstream-76
Upstream-74