View conserved binding sites


Gene
BR01G21730
Description
SHI RELATED SEQUENCE 1
Alias
Bra038880;Bra038880
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-366
Upstream-367
Matrix_119RRTF1Not availableUpstream-367
Upstream-368
Matrix_138RRTF1Not availableUpstream-367
Upstream-368
Matrix_147ERF3;AT1G80580Not availableUpstream-368
Upstream-369
Matrix_181Dof5.7Not availableUpstream-662
Matrix_224ERF1Not availableUpstream-367
Upstream-368
Matrix_234RAP2.3Not availableUpstream-366
Upstream-367
Matrix_261ATERF-1Not availableUpstream-367
Upstream-368
Matrix_277RAP2.6Not availableUpstream-367
Upstream-368
Matrix_287ERF2Not availableUpstream-366
Upstream-367
Matrix_288RAP2.3Not availableUpstream-367
Upstream-368
Matrix_295ERF1Not availableUpstream-368
Upstream-369
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-367
Upstream-368
Matrix_334AT3G23230Not availableUpstream-367
Upstream-368
Matrix_343AT2G33710Not availableUpstream-366
Upstream-367
Matrix_355ERF10;ERF11Not availableUpstream-367
Upstream-368
Matrix_360ORA59Not availableUpstream-368
Upstream-369
Matrix_363RAP2.3Not availableUpstream-367
Upstream-368
Matrix_378ATERF1Not availableUpstream-366
Upstream-367
Matrix_406ATERF-7Not availableUpstream-368
Upstream-369
Matrix_414AGL15Not availableUpstream-307
Matrix_426CRF1;CRF2Not availableUpstream-367
Upstream-368
Matrix_45DRNNot availableUpstream-368
Upstream-369
Upstream-1110
Matrix_462ATERF-8Not availableUpstream-368
Upstream-369
Upstream-1110
Matrix_473RRTF1Not availableUpstream-366
Upstream-367
Matrix_48PINot availableUpstream-305
Upstream-389
Matrix_484ATERF13Not availableUpstream-368
Upstream-369
Matrix_488ABF1Not availableUpstream-356
Upstream-357
Matrix_493AT1G22985;AT1G71130Not availableUpstream-367
Upstream-368
Matrix_50ATERF14;AT5G43410Not availableUpstream-367
Upstream-368
Matrix_506DRNL;ATERF-4Not availableUpstream-367
Upstream-368
Matrix_517ERF12Not availableUpstream-368
Upstream-369
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-367
Upstream-368
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-367
Upstream-368
Matrix_91CRF3Not availableUpstream-367
Upstream-368
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-401
Motif_129GAGAGMGSA1GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNAUpstream-69
Upstream-71
Upstream-73
Motif_15AMYBOX2amylase box; amylase element; Conserved sequence found in 5'upstream region of alpha-amylase gene of rice, wheat, barleyUpstream-20
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-600
Upstream-952
Motif_307TATCCAYMOTIFOSRAMY3DTATCCAY motif found in rice RAmy3D alpha-amylase gene promoter; a GATA motif as its antisense sequence; TATCCAY motif and G motif are responsible for sugar repressionUpstream-20
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-369
Motif_365ARF1 binding site motifARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factorsUpstream-438
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRUpstream-69
Upstream-71
Upstream-73
Upstream-75
Motif_570POLASIG2PolyA signal; poly A signal found in rice alpha-amylase; -10 to -30 in the case of animal genesUpstream-428
Motif_628TATCCAOSAMYTATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2Upstream-20
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-69
Upstream-71
Upstream-73
Upstream-75
Upstream-77
Upstream-79
Upstream-81
Upstream-83
Upstream-392
Upstream-394
Motif_85SORLIP5ATone of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-256
Upstream-931