Matrix_101 | ERF5 | Not available | Upstream | -366 |
| | | Upstream | -367 |
Matrix_119 | RRTF1 | Not available | Upstream | -367 |
| | | Upstream | -368 |
Matrix_138 | RRTF1 | Not available | Upstream | -367 |
| | | Upstream | -368 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -368 |
| | | Upstream | -369 |
Matrix_181 | Dof5.7 | Not available | Upstream | -662 |
Matrix_224 | ERF1 | Not available | Upstream | -367 |
| | | Upstream | -368 |
Matrix_234 | RAP2.3 | Not available | Upstream | -366 |
| | | Upstream | -367 |
Matrix_261 | ATERF-1 | Not available | Upstream | -367 |
| | | Upstream | -368 |
Matrix_277 | RAP2.6 | Not available | Upstream | -367 |
| | | Upstream | -368 |
Matrix_287 | ERF2 | Not available | Upstream | -366 |
| | | Upstream | -367 |
Matrix_288 | RAP2.3 | Not available | Upstream | -367 |
| | | Upstream | -368 |
Matrix_295 | ERF1 | Not available | Upstream | -368 |
| | | Upstream | -369 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -367 |
| | | Upstream | -368 |
Matrix_334 | AT3G23230 | Not available | Upstream | -367 |
| | | Upstream | -368 |
Matrix_343 | AT2G33710 | Not available | Upstream | -366 |
| | | Upstream | -367 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -367 |
| | | Upstream | -368 |
Matrix_360 | ORA59 | Not available | Upstream | -368 |
| | | Upstream | -369 |
Matrix_363 | RAP2.3 | Not available | Upstream | -367 |
| | | Upstream | -368 |
Matrix_378 | ATERF1 | Not available | Upstream | -366 |
| | | Upstream | -367 |
Matrix_406 | ATERF-7 | Not available | Upstream | -368 |
| | | Upstream | -369 |
Matrix_414 | AGL15 | Not available | Upstream | -307 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -367 |
| | | Upstream | -368 |
Matrix_45 | DRN | Not available | Upstream | -368 |
| | | Upstream | -369 |
| | | Upstream | -1110 |
Matrix_462 | ATERF-8 | Not available | Upstream | -368 |
| | | Upstream | -369 |
| | | Upstream | -1110 |
Matrix_473 | RRTF1 | Not available | Upstream | -366 |
| | | Upstream | -367 |
Matrix_48 | PI | Not available | Upstream | -305 |
| | | Upstream | -389 |
Matrix_484 | ATERF13 | Not available | Upstream | -368 |
| | | Upstream | -369 |
Matrix_488 | ABF1 | Not available | Upstream | -356 |
| | | Upstream | -357 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -367 |
| | | Upstream | -368 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -367 |
| | | Upstream | -368 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -367 |
| | | Upstream | -368 |
Matrix_517 | ERF12 | Not available | Upstream | -368 |
| | | Upstream | -369 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -367 |
| | | Upstream | -368 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -367 |
| | | Upstream | -368 |
Matrix_91 | CRF3 | Not available | Upstream | -367 |
| | | Upstream | -368 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Upstream | -401 |
Motif_129 | GAGAGMGSA1 | GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNA | Upstream | -69 |
| | | Upstream | -71 |
| | | Upstream | -73 |
Motif_15 | AMYBOX2 | amylase box; amylase element; Conserved sequence found in 5'upstream region of alpha-amylase gene of rice, wheat, barley | Upstream | -20 |
Motif_249 | DPBF1&2 binding site motif | A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system | Upstream | -600 |
| | | Upstream | -952 |
Motif_307 | TATCCAYMOTIFOSRAMY3D | TATCCAY motif found in rice RAmy3D alpha-amylase gene promoter; a GATA motif as its antisense sequence; TATCCAY motif and G motif are responsible for sugar repression | Upstream | -20 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -369 |
Motif_365 | ARF1 binding site motif | ARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factors | Upstream | -438 |
Motif_441 | GAGA8HVBKN3 | GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR | Upstream | -69 |
| | | Upstream | -71 |
| | | Upstream | -73 |
| | | Upstream | -75 |
Motif_570 | POLASIG2 | PolyA signal; poly A signal found in rice alpha-amylase; -10 to -30 in the case of animal genes | Upstream | -428 |
Motif_628 | TATCCAOSAMY | TATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2 | Upstream | -20 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -69 |
| | | Upstream | -71 |
| | | Upstream | -73 |
| | | Upstream | -75 |
| | | Upstream | -77 |
| | | Upstream | -79 |
| | | Upstream | -81 |
| | | Upstream | -83 |
| | | Upstream | -392 |
| | | Upstream | -394 |
Motif_85 | SORLIP5AT | one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Upstream | -256 |
| | | Upstream | -931 |