| Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Intron | 6865 |
| Matrix_269 | FHY3/FAR1 | Not available | Upstream | -112 |
| Matrix_335 | HSFB2A | Not available | Intron | 5304 |
| Matrix_508 | APL;AT3G12730;AT3G24120;UNE16 | Not available | Upstream | -339 |
| Matrix_81 | YAB1 | Not available | Upstream | -1416 |
| Motif_104 | CAREOSREP1 | CAREs (CAACTC regulatory elements) found in the promoter region of a cystein proteinase (REP-1) gene in rice | Upstream | -1446 |
| Motif_441 | GAGA8HVBKN3 | GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR | Upstream | -161 |
| Motif_450 | E2FCONSENSUS | E2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plants | Upstream | -1815 |
| Motif_549 | TBF1 | The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transition | Upstream | -109 |
| Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -162 |
| | | Upstream | -160 |
| | | Upstream | -158 |
| | | Upstream | -156 |
| | | Upstream | -154 |
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