Matrix_119 | RRTF1 | Not available | Upstream | -353 |
| | | Upstream | -354 |
Matrix_138 | RRTF1 | Not available | Upstream | -353 |
| | | Upstream | -354 |
Matrix_146 | ORA47 | Not available | Upstream | -1731 |
| | | Upstream | -1732 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -354 |
| | | Upstream | -355 |
Matrix_188 | SPL4 | Not available | Upstream | -803 |
Matrix_194 | HYH;HY5 | Not available | Upstream | -679 |
Matrix_224 | ERF1 | Not available | Upstream | -353 |
| | | Upstream | -354 |
Matrix_234 | RAP2.3 | Not available | Upstream | -352 |
| | | Upstream | -353 |
Matrix_24 | POC1 | Not available | Upstream | -678 |
Matrix_247 | PIF3 | Not available | Upstream | -682 |
Matrix_261 | ATERF-1 | Not available | Upstream | -353 |
| | | Upstream | -354 |
Matrix_269 | FHY3/FAR1 | Not available | Upstream | -95 |
| | | Upstream | -98 |
| | | Upstream | -259 |
Matrix_285 | DDF1 | Not available | Upstream | -354 |
| | | Upstream | -355 |
Matrix_287 | ERF2 | Not available | Upstream | -352 |
| | | Upstream | -353 |
Matrix_288 | RAP2.3 | Not available | Upstream | -353 |
| | | Upstream | -354 |
Matrix_295 | ERF1 | Not available | Upstream | -354 |
| | | Upstream | -355 |
Matrix_305 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -620 |
Matrix_307 | RGL2;RGL3 | Not available | Upstream | -803 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -353 |
| | | Upstream | -354 |
Matrix_334 | AT3G23230 | Not available | Upstream | -353 |
| | | Upstream | -354 |
Matrix_338 | AP2 | Not available | Upstream | -679 |
Matrix_343 | AT2G33710 | Not available | Upstream | -352 |
| | | Upstream | -353 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -353 |
| | | Upstream | -354 |
Matrix_360 | ORA59 | Not available | Upstream | -354 |
| | | Upstream | -355 |
Matrix_363 | RAP2.3 | Not available | Upstream | -353 |
| | | Upstream | -354 |
Matrix_378 | ATERF1 | Not available | Upstream | -352 |
| | | Upstream | -353 |
Matrix_406 | ATERF-7 | Not available | Upstream | -354 |
| | | Upstream | -355 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -353 |
| | | Upstream | -354 |
Matrix_45 | DRN | Not available | Upstream | -354 |
| | | Upstream | -355 |
Matrix_462 | ATERF-8 | Not available | Upstream | -354 |
| | | Upstream | -355 |
Matrix_473 | RRTF1 | Not available | Upstream | -352 |
| | | Upstream | -353 |
Matrix_48 | PI | Not available | Upstream | -94 |
Matrix_484 | ATERF13 | Not available | Upstream | -354 |
| | | Upstream | -355 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -353 |
| | | Upstream | -354 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -353 |
| | | Upstream | -354 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -353 |
| | | Upstream | -354 |
Matrix_517 | ERF12 | Not available | Upstream | -354 |
| | | Upstream | -355 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -353 |
| | | Upstream | -354 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -353 |
| | | Upstream | -354 |
Matrix_91 | CRF3 | Not available | Upstream | -353 |
| | | Upstream | -354 |
Motif_104 | CAREOSREP1 | CAREs (CAACTC regulatory elements) found in the promoter region of a cystein proteinase (REP-1) gene in rice | Upstream | -1111 |
Motif_15 | AMYBOX2 | amylase box; amylase element; Conserved sequence found in 5'upstream region of alpha-amylase gene of rice, wheat, barley | Upstream | -44 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -1740 |
| | | Upstream | -1790 |
Motif_307 | TATCCAYMOTIFOSRAMY3D | TATCCAY motif found in rice RAmy3D alpha-amylase gene promoter; a GATA motif as its antisense sequence; TATCCAY motif and G motif are responsible for sugar repression | Upstream | -44 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -355 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -1740 |
| | | Upstream | -1792 |
Motif_437 | ANAERO2CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1) | Upstream | -151 |
Motif_549 | TBF1 | The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transition | Upstream | -97 |
| | | Upstream | -260 |
Motif_628 | TATCCAOSAMY | TATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2 | Upstream | -44 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -196 |
| | | Upstream | -198 |
| | | Upstream | -200 |
| | | Upstream | -415 |
| | | Upstream | -417 |
| | | Upstream | -419 |
| | | Upstream | -571 |
| | | Upstream | -593 |