View conserved binding sites


Gene
AT4G36260
Description
Lateral root primordium (LRP) protein-related
Alias
O65517;STYLISH 2
Binding siteNameDescriptionLocationPosition
Matrix_119RRTF1Not availableUpstream-353
Upstream-354
Matrix_138RRTF1Not availableUpstream-353
Upstream-354
Matrix_146ORA47Not availableUpstream-1731
Upstream-1732
Matrix_147ERF3;AT1G80580Not availableUpstream-354
Upstream-355
Matrix_188SPL4Not availableUpstream-803
Matrix_194HYH;HY5Not availableUpstream-679
Matrix_224ERF1Not availableUpstream-353
Upstream-354
Matrix_234RAP2.3Not availableUpstream-352
Upstream-353
Matrix_24POC1Not availableUpstream-678
Matrix_247PIF3Not availableUpstream-682
Matrix_261ATERF-1Not availableUpstream-353
Upstream-354
Matrix_269FHY3/FAR1Not availableUpstream-95
Upstream-98
Upstream-259
Matrix_285DDF1Not availableUpstream-354
Upstream-355
Matrix_287ERF2Not availableUpstream-352
Upstream-353
Matrix_288RAP2.3Not availableUpstream-353
Upstream-354
Matrix_295ERF1Not availableUpstream-354
Upstream-355
Matrix_305PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-620
Matrix_307RGL2;RGL3Not availableUpstream-803
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-353
Upstream-354
Matrix_334AT3G23230Not availableUpstream-353
Upstream-354
Matrix_338AP2Not availableUpstream-679
Matrix_343AT2G33710Not availableUpstream-352
Upstream-353
Matrix_355ERF10;ERF11Not availableUpstream-353
Upstream-354
Matrix_360ORA59Not availableUpstream-354
Upstream-355
Matrix_363RAP2.3Not availableUpstream-353
Upstream-354
Matrix_378ATERF1Not availableUpstream-352
Upstream-353
Matrix_406ATERF-7Not availableUpstream-354
Upstream-355
Matrix_426CRF1;CRF2Not availableUpstream-353
Upstream-354
Matrix_45DRNNot availableUpstream-354
Upstream-355
Matrix_462ATERF-8Not availableUpstream-354
Upstream-355
Matrix_473RRTF1Not availableUpstream-352
Upstream-353
Matrix_48PINot availableUpstream-94
Matrix_484ATERF13Not availableUpstream-354
Upstream-355
Matrix_493AT1G22985;AT1G71130Not availableUpstream-353
Upstream-354
Matrix_50ATERF14;AT5G43410Not availableUpstream-353
Upstream-354
Matrix_506DRNL;ATERF-4Not availableUpstream-353
Upstream-354
Matrix_517ERF12Not availableUpstream-354
Upstream-355
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-353
Upstream-354
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-353
Upstream-354
Matrix_91CRF3Not availableUpstream-353
Upstream-354
Motif_104CAREOSREP1CAREs (CAACTC regulatory elements) found in the promoter region of a cystein proteinase (REP-1) gene in riceUpstream-1111
Motif_15AMYBOX2amylase box; amylase element; Conserved sequence found in 5'upstream region of alpha-amylase gene of rice, wheat, barleyUpstream-44
Motif_244ABRE-like binding site motifNot availableUpstream-1740
Upstream-1790
Motif_307TATCCAYMOTIFOSRAMY3DTATCCAY motif found in rice RAmy3D alpha-amylase gene promoter; a GATA motif as its antisense sequence; TATCCAY motif and G motif are responsible for sugar repressionUpstream-44
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-355
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-1740
Upstream-1792
Motif_437ANAERO2CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1)Upstream-151
Motif_549TBF1The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transitionUpstream-97
Upstream-260
Motif_628TATCCAOSAMYTATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2Upstream-44
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-196
Upstream-198
Upstream-200
Upstream-415
Upstream-417
Upstream-419
Upstream-571
Upstream-593