View conserved binding sites


Gene
AT2G15970
Description
cold regulated 413 plasma membrane 1
Alias
Q9XIM7;WCOR413
Binding siteNameDescriptionLocationPosition
Matrix_109GBF3Not availableUpstream-149
Matrix_113ABI5Not availableUpstream-149
Matrix_116ANAC55Not availableUpstream-1542
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-152
Matrix_120BEE2Not availableUpstream-148
Matrix_122ABF1;AREB2Not availableUpstream-149
Matrix_129ABF1Not availableUpstream-148
Matrix_134ABF1Not availableUpstream-148
Upstream-147
Matrix_14ZCW32;AT5G62610Not availableUpstream-148
Upstream-147
Matrix_145GBF4;AT5G44080Not availableUpstream-147
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-152
Matrix_156POC1Not availableUpstream-149
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-148
Matrix_192FHY3/FAR1Not availableUpstream-151
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-148
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-151
Matrix_233MYC3Not availableUpstream-147
Matrix_24POC1Not availableUpstream-152
Matrix_247PIF3Not availableUpstream-148
Matrix_259AT1G50680;AT1G51120Not availableUpstream-148
Matrix_264ATAREB1Not availableUpstream-151
Matrix_296GBF2Not availableUpstream-148
Upstream-147
Matrix_300bZIP68;bZIP16Not availableUpstream-148
Upstream-147
Matrix_301PIL5Not availableUpstream-147
Matrix_323BIM3Not availableUpstream-148
Matrix_330MYC2;TT8Not availableUpstream-148
Matrix_331GBF1Not availableUpstream-149
Matrix_332SPT;ALCNot availableUpstream-148
Upstream-147
Matrix_339bHLH104Not availableUpstream-148
Matrix_345POC1Not availableUpstream-152
Matrix_389ILR3Not availableUpstream-148
Matrix_480BES1Not availableUpstream-148
Matrix_515ddf2;ATCBF3;CBF1;CBF4Not availableUpstream-878
Matrix_53MYC3Not availableUpstream-150
Matrix_61ATCBF3Not availableUpstream-879
Matrix_64PIF5Not availableUpstream-147
Matrix_7PIF4Not availableUpstream-148
Upstream-146
Matrix_80BIM1Not availableUpstream-149
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-146
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-153
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-146
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFUpstream-148
Upstream-147
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-147
Upstream-146
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-153
Motif_244ABRE-like binding site motifNot availableUpstream-148
Upstream-146
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-148
Upstream-146
Motif_300ACGTROOT1;HY5Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. ACGT motif related to root expression; Gene: synthetic; perfect palindromic sequence (PA) containing G-box-related sequence; transacting factor: TAF-1; Binding of SGBF-1 (a Soybean G-box binding bZIP transcription factor) to ABRE is enhanced by SCOF-1 (a zinc finger protein ); Transcription of SCOF-1 is induced by low temperature and ABAUpstream-148
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-153
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-146
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-147
Upstream-146
Motif_473ABREOSRGA1ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxiaUpstream-147
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-148
Upstream-145
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-148
Upstream-145
Motif_638ABRE binding site motifNot availableUpstream-148
Upstream-146
Motif_641LRENPCABELRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241Upstream-149
Motif_88MYB2ATBinding site for ATMYB2, an Arabidopsis MYB homolog; ATMYB2 binds oligonucleotides that contained a consensus MYB recognition sequence (TAACTG), such as is in the SV40 enhancer and the maize bronze-1 promoter; ATMYB2 is involved in regulation of genes that are responsive to water stress in ArabidopsisUpstream-153