View conserved binding sites


Gene
AT1G50460
Description
hexokinase-like 1
Alias
ATHKL1;Q9LPS1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-171
Matrix_119RRTF1Not availableUpstream-172
Matrix_138RRTF1Not availableUpstream-172
Matrix_146ORA47Not availableUpstream-171
Matrix_147ERF3;AT1G80580Not availableUpstream-171
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-170
Matrix_224ERF1Not availableUpstream-172
Matrix_234RAP2.3Not availableUpstream-171
Matrix_243RAP2.12;RAP2.2Not availableUpstream-170
Matrix_252RAP2.6Not availableUpstream-171
Matrix_255cdf3Not availableUpstream-55
Matrix_260CAMTA3Not availableUpstream-1264
Matrix_261ATERF-1Not availableUpstream-171
Matrix_272DEAR4Not availableUpstream-171
Matrix_287ERF2Not availableUpstream-171
Matrix_288RAP2.3Not availableUpstream-172
Matrix_295ERF1Not availableUpstream-171
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-172
Matrix_334AT3G23230Not availableUpstream-170
Matrix_343AT2G33710Not availableUpstream-171
Matrix_355ERF10;ERF11Not availableUpstream-172
Matrix_360ORA59Not availableUpstream-171
Matrix_363RAP2.3Not availableUpstream-172
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-171
Matrix_378ATERF1Not availableUpstream-171
Matrix_406ATERF-7Not availableUpstream-173
Matrix_409DEAR3Not availableUpstream-172
Matrix_426CRF1;CRF2Not availableUpstream-170
Matrix_45DRNNot availableUpstream-171
Matrix_462ATERF-8Not availableUpstream-173
Matrix_473RRTF1Not availableUpstream-171
Matrix_48PINot availableUpstream-333
Matrix_484ATERF13Not availableUpstream-171
Matrix_493AT1G22985;AT1G71130Not availableUpstream-171
Matrix_50ATERF14;AT5G43410Not availableUpstream-172
Matrix_506DRNL;ATERF-4Not availableUpstream-170
Matrix_517ERF12Not availableUpstream-171
Matrix_518AT2G21230Not availableUpstream-191
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-172
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-170
Matrix_91CRF3Not availableUpstream-171
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-401
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-170
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-1261
Motif_353HEXAMERATH4hexamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 geneUpstream-480
Motif_391REALPHALGLHCB21REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulationUpstream-16
Motif_489SORLREP3ATone of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and also all SORLIPs;Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-407
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-329
Upstream-45