PLAZA 3.0 Dicots : Binding Sites

Gene families associated with a binding site

All is shown and individual cells refer to the target genes (per species).

Binding site: Motif_650
Name: SITEIIAOSPCNA
Description: Site IIa of rice PCNA (proliferating cell nuclear antigen) gene; Found at -197 to -188; Binding site for two nuclear proteins, PCF1 and PCF2; Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes; See AUXREPSIAA4

#Associated genes: 22
#Associated gene families: 17

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gene family	#genes (in total)	#associated genes	species	aly	ath	atr	bra	bvu	cla	cme	cpa	cre	cru	csi	egr	fve	gma	gra	lja	mdo	mes	mtr	olu	osa	ppa	ppe	ptr	rco	sly	stu	tca	tpa	vvi	zma
HOM03D000029	1996	1	31	58	57	30	120	37	51	55	45	1	56	46	69	44	160	106	39	132	94	90	1	63	33	52	92	54	73	84	49	58	53	94
HOM03D000073	1206	2	30	34	35	19	59	32	33	39	27	5	38	33	43	32	82	50	15	76	42	45	0	58	45	28	39	26	40	44	29	33	31	94
HOM03D000132	752	1	31	20	22	22	34	18	20	18	17	25	21	15	22	21	40	27	10	55	19	27	14	16	54	19	27	16	32	39	16	19	18	29
HOM03D000165	617	1	31	15	17	13	29	16	16	17	15	26	16	15	16	17	46	30	10	40	22	24	1	19	17	17	31	16	16	15	18	15	20	32
HOM03D000166	615	1	29	26	24	8	50	22	14	15	19	6	24	10	34	20	38	17	9	42	18	25	0	26	0	16	23	20	17	18	14	29	10	21
HOM03D000176	581	1	31	20	19	7	32	11	10	12	11	5	19	11	18	17	35	34	13	44	21	25	4	15	41	11	21	12	20	18	16	17	10	32
HOM03D000259	425	2	29	16	13	11	24	10	12	12	10	0	13	10	13	12	26	19	7	24	18	40	0	17	8	9	18	9	12	12	9	11	7	23
HOM03D000330	356	2	29	12	10	4	26	7	12	12	5	0	11	8	12	8	25	23	10	17	16	15	0	14	4	8	17	6	12	14	9	11	8	20
HOM03D000357	342	2	31	12	9	6	14	6	10	10	14	6	9	10	10	9	22	14	5	22	14	12	6	12	9	8	13	8	12	11	9	13	8	19
HOM03D000390	320	1	31	15	7	6	13	8	7	10	8	3	9	6	16	15	23	15	7	16	10	7	4	9	14	10	12	7	9	16	7	7	9	15
HOM03D000495	261	1	29	7	7	8	12	5	8	9	7	0	7	6	12	10	19	14	3	20	6	12	0	10	6	6	9	6	9	6	5	7	10	15
HOM03D000847	168	1	31	7	5	4	8	4	2	2	4	1	5	7	3	3	10	12	3	11	9	7	2	4	4	4	6	7	6	6	5	4	6	7
HOM03D001605	102	2	31	2	2	4	6	2	3	3	2	1	2	2	4	2	4	6	1	3	8	2	1	3	5	2	14	2	2	2	5	2	3	2
HOM03D002348	76	1	31	3	3	1	4	2	1	2	1	1	3	1	3	2	5	4	1	5	4	1	1	2	1	3	4	2	3	4	2	3	2	2
HOM03D002490	72	1	30	2	2	1	4	1	2	2	2	1	2	2	2	3	4	3	1	7	3	2	0	2	3	2	4	2	2	2	2	2	2	3
HOM03D004052	47	1	25	1	1	1	2	2	1	2	2	0	1	2	2	2	4	3	1	0	3	2	0	0	0	2	3	2	3	1	1	2	1	0
HOM03D004260	45	1	27	3	2	1	3	1	1	1	1	0	2	1	1	1	4	3	0	3	2	1	0	1	0	2	2	1	1	1	1	2	1	2