PLAZA 3.0 Dicots : Binding Sites

Gene families associated with a binding site

All is shown and individual cells refer to the target genes (per species).

Binding site: Motif_619
Name: SITEIIBOSPCNA
Description: Site IIb of rice PCNA (proliferating cell nuclear antigen) gene; Found at -178 to -169; Binding site for two nuclear proteins, PCF1 and PCF2; Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes

#Associated genes: 121
#Associated gene families: 73

Click table-header(s) to enable sorting

gene family	#genes (in total)	#associated genes	species	aly	ath	atr	bra	bvu	cla	cme	cpa	cre	cru	csi	egr	fve	gma	gra	lja	mdo	mes	mtr	olu	osa	ppa	ppe	ptr	rco	sly	stu	tca	tpa	vvi	zma
HOM03D000003	5194	1	29	164	155	111	274	119	132	138	132	0	149	141	208	140	378	236	93	304	303	236	0	162	95	132	257	154	183	171	134	150	135	208
HOM03D000006	4746	1	31	109	98	110	148	109	92	93	87	13	108	236	311	151	290	205	84	422	150	249	4	173	110	186	252	121	134	183	139	89	152	138
HOM03D000007	4579	1	29	124	134	36	177	83	55	74	55	0	148	181	480	134	258	137	43	457	140	281	0	161	2	188	346	97	119	166	144	79	172	108
HOM03D000014	2794	1	31	70	74	102	118	93	76	68	57	1	79	73	97	66	187	99	45	170	104	135	1	148	65	71	117	75	105	127	77	71	77	146
HOM03D000015	2743	3	29	87	92	43	172	45	67	74	68	0	95	95	149	84	163	140	57	184	110	87	0	105	32	86	139	78	69	79	88	79	67	109
HOM03D000024	2160	2	31	70	64	45	98	53	50	65	77	37	64	57	64	59	165	94	34	142	74	73	15	53	88	55	97	52	66	70	52	72	71	84
HOM03D000025	2126	1	27	19	22	78	26	25	0	0	11	0	34	95	100	45	89	36	5	86	47	99	0	300	1	99	52	55	180	426	55	15	60	66
HOM03D000029	1996	1	31	58	57	30	120	37	51	55	45	1	56	46	69	44	160	106	39	132	94	90	1	63	33	52	92	54	73	84	49	58	53	94
HOM03D000033	1847	1	31	60	57	47	94	54	44	47	50	42	58	59	72	63	119	85	16	16	62	86	45	53	74	55	77	60	56	64	47	51	63	71
HOM03D000041	1644	1	30	10	38	22	48	70	17	24	22	4	39	99	283	37	57	120	8	85	44	55	0	71	7	63	78	41	27	48	103	25	78	21
HOM03D000046	1586	4	29	53	55	26	91	34	48	48	42	0	53	40	42	37	122	82	27	82	67	53	0	65	44	39	70	43	57	59	39	53	40	75
HOM03D000057	1388	1	31	53	50	34	77	33	35	33	33	8	47	35	46	34	90	61	28	88	49	41	1	45	29	58	63	32	50	53	35	50	40	57
HOM03D000069	1220	5	31	33	31	30	57	27	26	31	31	29	32	36	36	31	82	51	16	79	48	47	20	34	41	33	67	36	38	37	34	29	28	70
HOM03D000082	1106	2	29	37	33	33	52	30	32	32	23	0	35	30	40	33	81	41	26	55	39	44	0	30	36	29	43	52	38	44	36	31	36	35
HOM03D000089	1046	2	29	38	37	16	69	14	31	31	16	0	38	23	43	23	72	57	27	37	39	59	0	38	39	30	51	23	30	40	23	36	17	49
HOM03D000096	1015	1	31	34	26	23	53	18	26	26	25	1	30	26	29	26	71	49	16	57	41	36	1	37	44	29	53	30	41	33	31	29	32	42
HOM03D000101	976	1	31	29	33	22	63	23	25	27	25	29	31	24	25	20	65	43	21	74	33	37	5	33	28	23	38	25	29	29	20	32	23	42
HOM03D000104	938	2	29	30	32	14	61	19	31	28	24	0	31	20	25	22	78	48	21	54	45	61	0	28	13	22	39	22	34	30	21	31	16	38
HOM03D000122	802	3	29	33	28	14	51	13	28	28	21	0	28	23	26	19	62	43	18	44	36	25	0	31	2	22	33	19	22	24	20	27	23	39
HOM03D000125	772	7	31	30	25	12	39	16	25	25	20	2	24	22	29	21	54	43	10	46	30	27	1	23	16	18	43	27	28	24	21	23	22	26
HOM03D000139	733	1	29	25	26	13	49	15	17	17	18	0	25	18	19	17	40	61	14	51	30	38	0	13	30	23	31	17	24	26	16	27	18	15
HOM03D000144	724	1	31	20	15	8	26	18	13	12	22	12	12	27	51	24	43	23	11	71	28	25	5	17	18	21	37	23	26	28	23	14	25	26
HOM03D000153	673	1	29	17	18	12	42	14	21	22	20	0	18	19	22	17	63	40	13	45	31	14	0	21	9	17	32	19	23	23	18	18	18	27
HOM03D000155	665	2	30	19	18	13	30	20	27	28	14	1	18	17	31	18	44	26	10	43	27	25	0	19	18	22	26	14	23	32	19	15	17	31
HOM03D000193	538	1	29	17	19	10	33	13	21	17	15	0	19	12	19	15	38	30	10	36	21	27	0	11	2	14	21	12	21	22	14	18	15	16
HOM03D000200	511	1	29	18	18	7	36	7	18	18	9	0	16	13	19	11	39	30	9	24	19	18	0	26	2	12	25	12	16	14	12	18	10	35
HOM03D000214	480	1	31	12	10	8	18	8	14	13	14	4	10	17	14	11	42	32	7	40	20	17	2	13	2	12	24	14	16	22	13	11	16	24
HOM03D000226	463	1	29	19	20	7	44	5	8	10	10	0	20	10	11	9	29	38	5	21	13	17	0	14	2	8	14	10	33	26	24	14	9	13
HOM03D000270	417	1	30	17	14	8	22	8	7	7	10	1	14	15	12	13	34	19	11	26	17	24	0	12	8	12	17	13	12	15	9	15	10	15
HOM03D000279	407	2	31	11	13	9	19	6	12	12	11	7	12	10	13	9	25	18	9	20	14	19	1	12	22	9	21	13	15	18	13	13	10	11
HOM03D000292	391	2	29	15	14	6	22	8	12	13	15	0	15	8	7	9	27	24	8	24	19	9	0	12	4	11	20	12	14	16	12	12	6	17
HOM03D000300	384	1	30	11	11	13	20	9	11	10	9	1	11	9	19	9	24	18	4	15	15	18	0	16	7	9	12	10	13	34	8	10	10	18
HOM03D000308	378	2	30	17	13	12	26	9	6	6	10	6	15	11	16	10	16	18	9	20	11	17	0	11	4	11	15	9	11	16	10	20	12	11
HOM03D000315	370	1	31	8	8	8	14	6	14	11	10	1	9	10	10	14	36	22	8	32	17	12	1	15	4	12	16	8	9	12	8	8	11	16
HOM03D000317	368	1	29	15	15	8	21	8	10	10	10	0	15	11	11	9	24	17	8	16	15	10	0	13	11	10	14	9	10	10	11	13	17	17
HOM03D000335	353	1	29	12	10	8	14	9	9	8	10	0	10	10	9	9	31	21	6	23	16	17	0	16	2	10	18	10	11	11	10	10	7	16
HOM03D000390	320	2	31	15	7	6	13	8	7	10	8	3	9	6	16	15	23	15	7	16	10	7	4	9	14	10	12	7	9	16	7	7	9	15
HOM03D000425	295	2	29	9	11	6	22	8	8	8	8	0	10	8	9	8	19	11	7	14	12	12	0	13	8	7	10	10	7	10	6	9	11	14
HOM03D000448	281	1	30	1	11	4	25	3	7	10	11	0	11	10	13	8	20	13	3	21	8	10	1	3	7	8	16	5	10	8	10	10	10	4
HOM03D000460	276	2	29	7	7	8	15	5	8	9	10	0	7	9	7	9	24	14	4	19	13	9	0	7	6	9	18	9	5	9	9	6	7	7
HOM03D000470	271	1	31	10	10	4	15	6	7	6	5	1	10	7	8	7	26	12	4	12	10	11	1	15	9	5	11	7	8	8	5	10	9	12
HOM03D000483	266	1	28	8	9	7	16	4	8	8	9	0	8	9	9	9	21	12	7	9	13	10	0	11	0	7	12	10	8	8	7	9	7	11
HOM03D000536	246	2	31	8	8	4	8	4	7	8	6	1	9	6	10	5	15	15	2	13	9	12	1	7	2	7	13	8	10	12	8	7	10	11
HOM03D000572	233	1	30	13	9	5	13	5	5	5	7	0	8	7	8	3	15	13	5	9	12	6	1	8	4	6	12	8	7	7	6	8	9	9
HOM03D001073	141	1	29	7	7	2	8	7	6	7	4	0	6	5	3	2	10	5	3	1	4	5	0	4	1	4	4	4	5	5	4	6	5	7
HOM03D001163	131	3	29	3	3	3	8	4	5	5	3	0	3	3	6	3	10	9	1	10	6	4	0	5	3	3	5	3	5	3	3	4	2	6
HOM03D001222	126	1	28	4	3	2	11	2	3	3	3	0	4	3	4	2	8	8	1	3	5	7	0	5	0	4	7	4	6	6	3	4	4	7
HOM03D001227	125	2	31	5	5	4	6	4	5	5	3	2	6	3	4	4	6	6	1	7	4	3	1	5	4	4	3	4	3	3	4	4	3	4
HOM03D001295	119	1	28	2	2	3	5	5	4	4	4	0	2	3	4	3	10	6	3	7	7	5	0	3	0	3	10	4	4	3	4	2	2	5
HOM03D001560	104	2	27	7	6	1	9	1	2	2	3	0	6	3	3	5	6	6	0	7	5	3	0	1	0	3	3	3	3	5	3	5	2	1
HOM03D001597	102	1	30	6	3	2	4	2	2	3	2	2	3	2	4	2	7	2	0	9	3	2	1	3	10	2	4	3	3	2	2	3	5	4
HOM03D001605	102	1	31	2	2	4	6	2	3	3	2	1	2	2	4	2	4	6	1	3	8	2	1	3	5	2	14	2	2	2	5	2	3	2
HOM03D001643	100	3	10	0	0	0	0	0	7	0	0	0	0	0	0	22	0	5	0	8	11	0	0	0	0	17	25	1	2	0	2	0	0	0
HOM03D001707	96	2	29	3	3	1	6	2	2	2	2	0	4	2	3	2	10	4	2	3	4	4	0	3	5	2	4	2	4	3	2	3	2	7
HOM03D002009	85	1	28	0	3	1	3	3	3	3	2	0	4	2	3	3	10	4	3	6	3	5	0	1	1	2	4	2	3	3	2	3	2	1
HOM03D002067	83	1	28	3	2	2	4	1	4	3	2	0	3	2	2	1	6	5	3	7	4	3	0	1	0	3	3	1	5	4	2	3	1	3
HOM03D002078	82	5	29	6	6	1	5	3	1	2	1	0	4	2	2	2	5	3	1	4	4	2	0	3	2	2	5	2	2	2	2	4	1	3
HOM03D002250	78	1	31	1	2	2	5	2	2	2	2	2	2	2	2	2	4	2	1	8	4	2	2	2	2	3	4	2	2	2	2	2	2	4
HOM03D002342	76	1	27	2	2	2	2	2	3	3	3	0	2	0	2	2	8	3	3	2	4	4	0	4	0	2	4	2	4	3	2	1	2	3
HOM03D002479	72	1	30	4	3	1	5	2	2	2	2	1	3	1	2	1	3	3	0	5	3	1	2	2	2	1	3	2	3	3	2	3	2	3
HOM03D003443	53	2	28	2	3	1	5	2	1	1	1	0	3	2	2	2	2	3	2	4	1	1	0	1	1	2	2	1	1	1	2	2	0	2
HOM03D003761	49	3	19	3	3	0	4	0	0	1	2	0	3	1	1	1	8	4	0	1	3	4	0	0	0	2	4	1	0	0	1	0	0	2
HOM03D004575	43	1	26	1	2	1	5	1	1	2	1	0	2	1	1	1	4	2	2	2	2	2	0	0	0	1	1	1	1	1	2	2	1	0
HOM03D004631	43	3	26	2	2	1	4	1	1	1	1	0	2	1	2	3	4	1	1	1	2	2	0	0	0	1	3	1	1	1	1	2	1	0
HOM03D004670	43	1	31	2	1	1	5	1	1	1	1	1	1	1	1	1	2	1	1	2	2	1	1	2	2	1	2	1	1	1	1	1	1	2
HOM03D004823	42	3	27	2	2	1	6	1	1	2	1	0	1	1	1	1	1	2	3	2	2	1	0	1	0	1	2	1	1	0	1	2	1	1
HOM03D004862	42	1	30	1	1	1	3	1	1	1	1	1	1	2	1	1	2	2	1	6	1	1	1	1	0	1	2	1	1	1	1	1	1	2
HOM03D005222	40	1	28	1	1	1	2	1	1	1	1	0	1	1	1	1	4	1	1	5	1	1	0	1	0	1	1	1	2	3	1	1	1	2
HOM03D005484	38	1	28	1	1	1	1	1	1	1	1	0	1	1	1	1	4	1	1	4	1	2	0	3	0	1	2	1	1	1	1	1	1	1
HOM03D006462	34	2	22	3	2	0	5	0	1	1	0	0	2	1	1	1	2	1	1	2	1	1	0	0	0	1	2	1	1	0	1	2	0	1
HOM03D006641	33	1	27	1	1	1	2	1	1	1	1	0	1	1	1	1	2	2	0	2	1	1	0	1	0	1	1	1	1	1	1	1	2	2
HOM03D006755	33	1	21	1	1	1	0	0	0	1	1	1	0	1	1	0	2	2	1	0	1	1	0	5	1	0	5	0	1	1	1	0	2	2
HOM03D007503	26	1	18	0	0	1	0	1	0	0	1	0	0	2	1	1	4	1	0	2	3	1	0	0	0	1	2	1	1	1	1	0	1	0