PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Motif_619
Name: SITEIIBOSPCNA
Description: Site IIb of rice PCNA (proliferating cell nuclear antigen) gene; Found at -178 to -169; Binding site for two nuclear proteins, PCF1 and PCF2; Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes

#Associated genes: 121
#Associated MapMan terms: 71

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	26 (21.49%)	0	3	1	7	6	3	2	4
27.3	RNA.regulation of transcription	20 (16.53%)	0	1	1	7	4	1	2	4
34	transport	9 (7.44%)	0	0	2	1	2	2	1	1
20	stress	8 (6.61%)	0	0	0	3	4	0	1	0
20.2	stress.abiotic	7 (5.79%)	0	0	0	3	4	0	0	0
20.2.1	stress.abiotic.heat	7 (5.79%)	0	0	0	3	4	0	0	0
31	cell	6 (4.96%)	0	0	1	1	1	0	0	3
33	development	6 (4.96%)	0	0	2	2	0	1	0	1
33.99	development.unspecified	6 (4.96%)	0	0	2	2	0	1	0	1
34.19	transport.Major Intrinsic Proteins	6 (4.96%)	0	0	2	0	2	0	1	1
27.1	RNA.processing	5 (4.13%)	0	1	0	0	2	2	0	0
29	protein	5 (4.13%)	0	0	1	0	2	1	0	1
34.19.1	transport.Major Intrinsic Proteins.PIP	5 (4.13%)	0	0	2	0	2	0	1	0
10	cell wall	4 (3.31%)	0	0	0	2	0	0	0	2
27.1.19	RNA.processing.ribonucleases	4 (3.31%)	0	0	0	0	2	2	0	0
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	4 (3.31%)	0	0	0	3	0	0	0	1
30	signalling	4 (3.31%)	0	0	0	2	2	0	0	0
31.1	cell.organisation	4 (3.31%)	0	0	1	1	0	0	0	2
26	misc	3 (2.48%)	1	0	0	0	1	0	1	0
27.3.7	RNA.regulation of transcription.C2C2(Zn) CO-like, Constans-like zinc finger family	3 (2.48%)	0	0	0	1	1	0	0	1
29.3	protein.targeting	3 (2.48%)	0	0	1	0	1	1	0	0
10.6	cell wall.degradation	2 (1.65%)	0	0	0	0	0	0	0	2
10.6.3	cell wall.degradation.pectate lyases and polygalacturonases	2 (1.65%)	0	0	0	0	0	0	0	2
10.7	cell wall.modification	2 (1.65%)	0	0	0	2	0	0	0	0
21	redox	2 (1.65%)	0	0	0	0	0	1	0	1
21.2	redox.ascorbate and glutathione	2 (1.65%)	0	0	0	0	0	1	0	1
21.2.1	redox.ascorbate and glutathione.ascorbate	2 (1.65%)	0	0	0	0	0	1	0	1
26.7	misc.oxidases - copper, flavone etc	2 (1.65%)	1	0	0	0	0	0	1	0
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	2 (1.65%)	0	0	0	1	1	0	0	0
27.3.30	RNA.regulation of transcription.Trihelix, Triple-Helix transcription factor family	2 (1.65%)	0	0	0	2	0	0	0	0
27.3.5	RNA.regulation of transcription.ARR	2 (1.65%)	0	0	0	0	0	1	0	1
27.3.67	RNA.regulation of transcription.putative transcription regulator	2 (1.65%)	0	1	0	0	1	0	0	0
29.3.3	protein.targeting.chloroplast	2 (1.65%)	0	0	0	0	1	1	0	0
30.2	signalling.receptor kinases	2 (1.65%)	0	0	0	1	1	0	0	0
34.12	transport.metal	2 (1.65%)	0	0	0	1	0	1	0	0
1	PS	1 (0.83%)	0	0	0	0	0	1	0	0
1.1	PS.lightreaction	1 (0.83%)	0	0	0	0	0	1	0	0
1.1.2	PS.lightreaction.photosystem I	1 (0.83%)	0	0	0	0	0	1	0	0
1.1.2.2	PS.lightreaction.photosystem I.PSI polypeptide subunits	1 (0.83%)	0	0	0	0	0	1	0	0
12	N-metabolism	1 (0.83%)	0	0	0	0	0	0	0	1
12.2	N-metabolism.ammonia metabolism	1 (0.83%)	0	0	0	0	0	0	0	1
12.2.1	N-metabolism.ammonia metabolism.glutamate synthase	1 (0.83%)	0	0	0	0	0	0	0	1
17	hormone metabolism	1 (0.83%)	0	0	0	0	0	1	0	0
17.2	hormone metabolism.auxin	1 (0.83%)	0	0	0	0	0	1	0	0
17.2.3	hormone metabolism.auxin.induced-regulated-responsive-activated	1 (0.83%)	0	0	0	0	0	1	0	0
20.1	stress.biotic	1 (0.83%)	0	0	0	0	0	0	1	0
26.12	misc.peroxidases	1 (0.83%)	0	0	0	0	1	0	0	0
27.1.2	RNA.processing.RNA helicase	1 (0.83%)	0	1	0	0	0	0	0	0
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	1 (0.83%)	0	0	0	0	0	0	0	1
27.3.20	RNA.regulation of transcription.G2-like transcription factor family, GARP	1 (0.83%)	0	0	0	0	1	0	0	0
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	1 (0.83%)	0	0	1	0	0	0	0	0
27.3.29	RNA.regulation of transcription.TCP transcription factor family	1 (0.83%)	0	0	0	0	0	0	1	0
27.3.40	RNA.regulation of transcription.Aux/IAA family	1 (0.83%)	0	0	0	0	0	0	1	0
27.4	RNA.RNA binding	1 (0.83%)	0	1	0	0	0	0	0	0
29.2.1.99.99	protein.synthesis.ribosomal protein.unknown.unknown	1 (0.83%)	0	0	0	0	1	0	0	0
29.3.4	protein.targeting.secretory pathway	1 (0.83%)	0	0	1	0	0	0	0	0
29.3.4.99	protein.targeting.secretory pathway.unspecified	1 (0.83%)	0	0	1	0	0	0	0	0
29.4	protein.postranslational modification	1 (0.83%)	0	0	0	0	1	0	0	0
29.4.1	protein.postranslational modification.kinase	1 (0.83%)	0	0	0	0	1	0	0	0
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	1 (0.83%)	0	0	0	0	1	0	0	0
29.5	protein.degradation	1 (0.83%)	0	0	0	0	0	0	0	1
29.5.4	protein.degradation.aspartate protease	1 (0.83%)	0	0	0	0	0	0	0	1
30.2.11	signalling.receptor kinases.leucine rich repeat XI	1 (0.83%)	0	0	0	1	0	0	0	0
30.2.17	signalling.receptor kinases.DUF 26	1 (0.83%)	0	0	0	0	1	0	0	0
30.3	signalling.calcium	1 (0.83%)	0	0	0	1	0	0	0	0
30.6	signalling.MAP kinases	1 (0.83%)	0	0	0	0	1	0	0	0
31.2	cell.division	1 (0.83%)	0	0	0	0	1	0	0	0
31.2.5	cell.division.plastid	1 (0.83%)	0	0	0	0	1	0	0	0
31.3	cell.cycle	1 (0.83%)	0	0	0	0	0	0	0	1
34.19.2	transport.Major Intrinsic Proteins.TIP	1 (0.83%)	0	0	0	0	0	0	0	1
34.7	transport.phosphate	1 (0.83%)	0	0	0	0	0	1	0	0