PLAZA 3.0 Dicots : Binding Sites

InterPro domains associated with a binding site

Binding site: Motif_540
Name: CCA1 motif1 BS in CAB1
Description: A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene

#Associated genes: 41
#Associated InterPro terms: 70

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InterPro	Description	#Associated genes	ath	bra	cme	egr	gma	ptr	ppe	vvi
IPR012864	Cysteamine dioxygenase	3 (7.32%)	0	0	0	0	3	0	0	0
IPR011051	RmlC-like cupin domain	3 (7.32%)	0	0	0	0	3	0	0	0
IPR014710	RmlC-like jelly roll fold	3 (7.32%)	0	0	0	0	3	0	0	0
IPR016024	Armadillo-type fold	2 (4.88%)	0	0	1	0	1	0	0	0
IPR004827	Basic-leucine zipper domain	2 (4.88%)	0	0	0	0	0	2	0	0
IPR004282	Chloroplast envelope membrane protein, CemA	2 (4.88%)	0	0	0	0	0	0	1	1
IPR015898	G-protein gamma-like domain	2 (4.88%)	0	0	0	0	0	0	1	1
IPR008422	Homeobox KN domain	2 (4.88%)	0	0	0	0	0	2	0	0
IPR001356	Homeobox domain	2 (4.88%)	0	0	0	0	0	2	0	0
IPR009057	Homeodomain-like	2 (4.88%)	0	0	0	0	0	2	0	0
IPR027417	P-loop containing nucleoside triphosphate hydrolase	2 (4.88%)	0	0	0	0	0	1	0	1
IPR006563	POX domain	2 (4.88%)	0	0	0	0	0	2	0	0
IPR002677	Ribosomal protein L32p	2 (4.88%)	0	0	0	1	1	0	0	0
IPR000863	Sulfotransferase domain	2 (4.88%)	0	0	0	0	0	1	0	1
IPR003851	Zinc finger, Dof-type	2 (4.88%)	0	0	0	0	0	2	0	0
IPR011332	Zinc-binding ribosomal protein	2 (4.88%)	0	0	0	1	1	0	0	0
IPR017107	Adaptor protein complex AP-1, gamma subunit	1 (2.44%)	0	0	0	0	1	0	0	0
IPR000043	Adenosylhomocysteinase	1 (2.44%)	0	1	0	0	0	0	0	0
IPR013785	Aldolase-type TIM barrel	1 (2.44%)	0	0	0	0	0	0	1	0
IPR004364	Aminoacyl-tRNA synthetase, class II (D/K/N)	1 (2.44%)	0	1	0	0	0	0	0	0
IPR018150	Aminoacyl-tRNA synthetase, class II (D/K/N)-like	1 (2.44%)	0	1	0	0	0	0	0	0
IPR011989	Armadillo-like helical	1 (2.44%)	0	0	0	0	1	0	0	0
IPR004522	Asparagine-tRNA ligase	1 (2.44%)	0	1	0	0	0	0	0	0
IPR003103	BAG domain	1 (2.44%)	0	0	0	0	0	1	0	0
IPR001251	CRAL-TRIO domain	1 (2.44%)	1	0	0	0	0	0	0	0
IPR011074	CRAL/TRIO, N-terminal domain	1 (2.44%)	1	0	0	0	0	0	0	0
IPR001071	Cellular retinaldehyde binding/alpha-tocopherol transport	1 (2.44%)	1	0	0	0	0	0	0	0
IPR008152	Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain	1 (2.44%)	0	0	0	0	1	0	0	0
IPR008153	Clathrin adaptor, gamma-adaptin, appendage	1 (2.44%)	0	0	0	0	1	0	0	0
IPR002553	Clathrin/coatomer adaptor, adaptin-like, N-terminal	1 (2.44%)	0	0	0	0	1	0	0	0
IPR013041	Coatomer/clathrin adaptor appendage, Ig-like subdomain	1 (2.44%)	0	0	0	0	1	0	0	0
IPR001128	Cytochrome P450	1 (2.44%)	0	0	1	0	0	0	0	0
IPR002401	Cytochrome P450, E-class, group I	1 (2.44%)	0	0	1	0	0	0	0	0
IPR017972	Cytochrome P450, conserved site	1 (2.44%)	0	0	1	0	0	0	0	0
IPR002376	Formyl transferase, N-terminal	1 (2.44%)	0	0	0	0	1	0	0	0
IPR004810	Formyltetrahydrofolate deformylase	1 (2.44%)	0	0	0	0	1	0	0	0
IPR000741	Fructose-bisphosphate aldolase, class-I	1 (2.44%)	0	0	0	0	0	0	1	0
IPR009038	GOLD	1 (2.44%)	1	0	0	0	0	0	0	0
IPR007123	Gelsolin domain	1 (2.44%)	0	0	0	0	1	0	0	0
IPR003891	Initiation factor eIF-4 gamma, MA3	1 (2.44%)	0	0	1	0	0	0	0	0
IPR004883	Lateral organ boundaries, LOB	1 (2.44%)	0	0	0	0	0	0	0	1
IPR016021	MIF4-like, type 1/2/3	1 (2.44%)	0	0	1	0	0	0	0	0
IPR025714	Methyltransferase domain	1 (2.44%)	1	0	0	0	0	0	0	0
IPR003690	Mitochodrial transcription termination factor-related	1 (2.44%)	0	0	0	0	0	0	1	0
IPR016040	NAD(P)-binding domain	1 (2.44%)	0	1	0	0	0	0	0	0
IPR012334	Pectin lyase fold	1 (2.44%)	0	0	0	0	0	0	1	0
IPR011050	Pectin lyase fold/virulence factor	1 (2.44%)	0	0	0	0	0	0	1	0
IPR018040	Pectinesterase, active site	1 (2.44%)	0	0	0	0	0	0	1	0
IPR000070	Pectinesterase, catalytic	1 (2.44%)	0	0	0	0	0	0	1	0
IPR025771	Phosphoethanolamine N-methyltransferase	1 (2.44%)	1	0	0	0	0	0	0	0
IPR023333	Proteasome B-type subunit	1 (2.44%)	1	0	0	0	0	0	0	0
IPR016050	Proteasome beta-type subunit, conserved site	1 (2.44%)	1	0	0	0	0	0	0	0
IPR001353	Proteasome, subunit alpha/beta	1 (2.44%)	1	0	0	0	0	0	0	0
IPR008480	Protein of unknown function DUF761, plant	1 (2.44%)	0	0	0	0	0	0	1	0
IPR015655	Protein phosphatase 2C	1 (2.44%)	0	0	0	0	0	0	0	1
IPR001932	Protein phosphatase 2C (PP2C)-like domain	1 (2.44%)	0	0	0	0	0	0	0	1
IPR000222	Protein phosphatase 2C, manganese/magnesium aspartate binding site	1 (2.44%)	0	0	0	0	0	0	0	1
IPR015878	S-adenosyl-L-homocysteine hydrolase, NAD binding domain	1 (2.44%)	0	1	0	0	0	0	0	0
IPR020082	S-adenosyl-L-homocysteine hydrolase, conserved site	1 (2.44%)	0	1	0	0	0	0	0	0
IPR018958	SMI1/KNR4 like domain	1 (2.44%)	0	0	0	0	0	0	1	0
IPR004853	Triose-phosphate transporter domain	1 (2.44%)	0	0	0	0	0	1	0	0
IPR000626	Ubiquitin domain	1 (2.44%)	0	0	0	0	0	1	0	0
IPR003128	Villin headpiece	1 (2.44%)	0	0	0	0	1	0	0	0
IPR007122	Villin/Gelsolin	1 (2.44%)	0	0	0	0	1	0	0	0
IPR001680	WD40 repeat	1 (2.44%)	0	0	0	0	1	0	0	0
IPR017986	WD40-repeat-containing domain	1 (2.44%)	0	0	0	0	1	0	0	0
IPR015943	WD40/YVTN repeat-like-containing domain	1 (2.44%)	0	0	0	0	1	0	0	0
IPR007656	Zein-binding domain	1 (2.44%)	0	0	0	0	0	1	0	0
IPR001841	Zinc finger, RING-type	1 (2.44%)	0	0	0	0	0	0	1	0
IPR013083	Zinc finger, RING/FYVE/PHD-type	1 (2.44%)	0	0	0	0	0	0	1	0