PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Motif_227
Name: WRKY43;WRKY38;WRKY26
Description: Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense;Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function

#Associated genes: 83
#Associated MapMan terms: 63

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	16 (19.28%)	1	1	0	4	3	1	4	2
27.3	RNA.regulation of transcription	14 (16.87%)	1	1	0	4	3	1	4	0
29	protein	8 (9.64%)	1	1	0	1	3	1	1	0
29.4	protein.postranslational modification	7 (8.43%)	1	1	0	1	3	1	0	0
16	secondary metabolism	5 (6.02%)	1	0	0	2	0	2	0	0
13	amino acid metabolism	4 (4.82%)	1	0	0	0	0	1	1	1
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	4 (4.82%)	0	0	3	0	0	0	1	0
13.1	amino acid metabolism.synthesis	3 (3.61%)	1	0	0	0	0	1	0	1
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	3 (3.61%)	0	0	0	0	2	0	1	0
27.3.29	RNA.regulation of transcription.TCP transcription factor family	3 (3.61%)	0	0	0	3	0	0	0	0
33	development	3 (3.61%)	0	1	0	0	0	0	1	1
33.99	development.unspecified	3 (3.61%)	0	1	0	0	0	0	1	1
13.1.5	amino acid metabolism.synthesis.serine-glycine-cysteine group	2 (2.41%)	1	0	0	0	0	0	0	1
13.1.5.3	amino acid metabolism.synthesis.serine-glycine-cysteine group.cysteine	2 (2.41%)	1	0	0	0	0	0	0	1
13.1.5.3.2	amino acid metabolism.synthesis.serine-glycine-cysteine group.cysteine.SAT	2 (2.41%)	1	0	0	0	0	0	0	1
16.2	secondary metabolism.phenylpropanoids	2 (2.41%)	0	0	0	1	0	1	0	0
16.2.1	secondary metabolism.phenylpropanoids.lignin biosynthesis	2 (2.41%)	0	0	0	1	0	1	0	0
16.2.1.3	secondary metabolism.phenylpropanoids.lignin biosynthesis.4CL	2 (2.41%)	0	0	0	1	0	1	0	0
17	hormone metabolism	2 (2.41%)	0	0	0	0	0	2	0	0
24	Biodegradation of Xenobiotics	2 (2.41%)	0	0	0	1	1	0	0	0
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	2 (2.41%)	0	0	0	0	1	0	1	0
27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	2 (2.41%)	0	1	0	0	0	0	1	0
27.4	RNA.RNA binding	2 (2.41%)	0	0	0	0	0	0	0	2
30	signalling	2 (2.41%)	0	0	0	0	1	1	0	0
11	lipid metabolism	1 (1.20%)	0	0	0	0	0	1	0	0
11.1	lipid metabolism.FA synthesis and FA elongation	1 (1.20%)	0	0	0	0	0	1	0	0
11.1.8	lipid metabolism.FA synthesis and FA elongation.acyl coa ligase	1 (1.20%)	0	0	0	0	0	1	0	0
13.1.6	amino acid metabolism.synthesis.aromatic aa	1 (1.20%)	0	0	0	0	0	1	0	0
13.1.6.3	amino acid metabolism.synthesis.aromatic aa.phenylalanine	1 (1.20%)	0	0	0	0	0	1	0	0
13.1.6.3.1	amino acid metabolism.synthesis.aromatic aa.phenylalanine.arogenate dehydratase / prephenate dehydratase	1 (1.20%)	0	0	0	0	0	1	0	0
13.2	amino acid metabolism.degradation	1 (1.20%)	0	0	0	0	0	0	1	0
13.2.4	amino acid metabolism.degradation.branched chain group	1 (1.20%)	0	0	0	0	0	0	1	0
13.2.4.4	amino acid metabolism.degradation.branched chain group.leucine	1 (1.20%)	0	0	0	0	0	0	1	0
16.1	secondary metabolism.isoprenoids	1 (1.20%)	1	0	0	0	0	0	0	0
16.1.2	secondary metabolism.isoprenoids.mevalonate pathway	1 (1.20%)	1	0	0	0	0	0	0	0
16.1.2.3	secondary metabolism.isoprenoids.mevalonate pathway.HMG-CoA reductase	1 (1.20%)	1	0	0	0	0	0	0	0
16.10	secondary metabolism.simple phenols	1 (1.20%)	0	0	0	1	0	0	0	0
16.5	secondary metabolism.sulfur-containing	1 (1.20%)	0	0	0	0	0	1	0	0
16.5.99	secondary metabolism.sulfur-containing.misc	1 (1.20%)	0	0	0	0	0	1	0	0
16.5.99.1	secondary metabolism.sulfur-containing.misc.alliinase	1 (1.20%)	0	0	0	0	0	1	0	0
17.1	hormone metabolism.abscisic acid	1 (1.20%)	0	0	0	0	0	1	0	0
17.1.2	hormone metabolism.abscisic acid.signal transduction	1 (1.20%)	0	0	0	0	0	1	0	0
17.5	hormone metabolism.ethylene	1 (1.20%)	0	0	0	0	0	1	0	0
17.5.2	hormone metabolism.ethylene.signal transduction	1 (1.20%)	0	0	0	0	0	1	0	0
18	Co-factor and vitamine metabolism	1 (1.20%)	0	0	0	0	0	1	0	0
18.5	Co-factor and vitamine metabolism.folate & vitamine K	1 (1.20%)	0	0	0	0	0	1	0	0
18.5.2	Co-factor and vitamine metabolism.folate & vitamine K.vitamine K	1 (1.20%)	0	0	0	0	0	1	0	0
18.5.2.4	Co-factor and vitamine metabolism.folate & vitamine K.vitamine K.o-Succinyl-BenzoylCoa Synthetase	1 (1.20%)	0	0	0	0	0	1	0	0
26	misc	1 (1.20%)	1	0	0	0	0	0	0	0
26.7	misc.oxidases - copper, flavone etc	1 (1.20%)	1	0	0	0	0	0	0	0
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	1 (1.20%)	1	0	0	0	0	0	0	0
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	1 (1.20%)	0	0	0	0	0	0	1	0
27.3.64	RNA.regulation of transcription.PHOR1	1 (1.20%)	0	0	0	0	0	1	0	0
27.3.99	RNA.regulation of transcription.unclassified	1 (1.20%)	0	0	0	1	0	0	0	0
29.4.1	protein.postranslational modification.kinase	1 (1.20%)	0	0	0	1	0	0	0	0
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	1 (1.20%)	0	0	0	1	0	0	0	0
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	1 (1.20%)	0	0	0	0	0	1	0	0
29.8	protein.assembly and cofactor ligation	1 (1.20%)	0	0	0	0	0	0	1	0
30.2	signalling.receptor kinases	1 (1.20%)	0	0	0	0	0	1	0	0
30.2.99	signalling.receptor kinases.misc	1 (1.20%)	0	0	0	0	0	1	0	0
30.3	signalling.calcium	1 (1.20%)	0	0	0	0	1	0	0	0
31	cell	1 (1.20%)	0	0	0	0	1	0	0	0
31.4	cell.vesicle transport	1 (1.20%)	0	0	0	0	1	0	0	0