PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Motif_595
Name: REGION1OSOSEM
Description: region 1 ABRE-like sequence found in rice Osem gene promoter; Important for regulation by ABA; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption

Sequence: CGGCGGCCTCGCCACG
Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Motif_506	IDRSZMFER1	IDRS (Iron-Dependent Regulatory Sequence) found in maize and Arabidopsis ferritin genes (Fer1); IDRS is responsible for transcriptional repression of ZmFer1 gene under low iron supply conditions; IDRS is not involved in the Fe-regulated expression of the AtAPX1 gene	62.50%
Matrix_405	DREB2C	Not Available	56.96%
Motif_555	ABRECE3ZMRAB28	CE3 (coupling element 3) in maize rab28 gene promoter; ABA responsive element; stress response; Similar (10 of 12) to CE3 in A1 gene of barley; See ABRECE3HVA1; Found at -126 to -115	56.25%
Motif_463	GRAZMRAB17	GRA; GC-rich rab activator; Found in the promoter of ABA responsive rab17 gene from maize; Important for transcription in leaves but not in embryos	56.25%
Motif_402	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	56.25%
Matrix_297	TCP15	Not Available	54.57%
Matrix_252	RAP2.6	Not Available	53.97%
Matrix_232	TCP23	Not Available	53.85%
Motif_102	OCETYPEINTHISTONE	Type I element; Oct-containing composite element Type I found in tobacco histone gene promoter; Oct (octomer) motif is paired with Hex motif to form Type I element; Required for S-phase specific and meristematic tissue-specific expression	52.42%
Matrix_473	RRTF1	Not Available	52.26%
Matrix_130	TCP16	Not Available	51.35%
Matrix_378	ATERF1	Not Available	51.19%
Matrix_138	RRTF1	Not Available	50.89%
Matrix_42	AT2G45680	Not Available	50.41%
Matrix_216	TCP16	Not Available	50.22%
Matrix_119	RRTF1	Not Available	50.08%
Motif_31	UPRE1AT	ERSEII-like sequence found in the plant UPRE (unfolded protein response element) in Arabidopsis thaliana; Either of ERSEII or XBP1 binding sites is essential and sufficient for the UPR	50.00%
Motif_264	GCBP2ZMGAPC4	Binding site of tobacco nuclear factor (GCBP-2) found in the maize GapC4 (Glyceraldehyde-3-phosphate dehydrogenase 4) gene promoter; Located between -293 and -285	50.00%
Motif_301	SPHZMC1	Sph element found in the maize C1 gene promoter; Located between -142 and -132; Essential for VP1 activation; VP1 gene is specifically required for expression of the maturation program in seed development; VP1 is a novel transcription factor possibly involved in potentiation of a seed-specific hormone response	50.00%
Motif_534	GBOXRELOSAMY3	G box-related element found in Amy3D (amylase) promoter of rice; Similar to ABRE	50.00%
Motif_101	MYB61	AtMYB61, an R2R3-MYB transcription factor, functions as a pleiotropic regulator via a small gene network	50.00%
Motif_636	AMMORESVDCRNIA1	Motif (VD) found in the Chlamydomonas Nia1 gene promoter; Located between -33 and -8; Involved in Nia1 transcription activation	50.00%
Motif_60	AtERF-4; AtERF-3	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	50.00%
Motif_154	ABREBNNAPA	ABRE of napA storage-protein gene of Brassica napus; ABA responsive element; dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE; B3 domain of ABI3 interacts with the RY/G complex	50.00%
Motif_619	SITEIIBOSPCNA	Site IIb of rice PCNA (proliferating cell nuclear antigen) gene; Found at -178 to -169; Binding site for two nuclear proteins, PCF1 and PCF2; Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes	50.00%
Motif_50	AtERF-7; AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses	50.00%
Motif_219	E2Fa	The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants	50.00%
Motif_191	AtERF-4; AtERF-3	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	50.00%
Motif_224	CGTGTSPHZMC1	Sequence found in the maize C1 gene promoter; Located between -147 to -132; Containing Sph element; Required for ABA responsiveness	50.00%