PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Motif_497
Name: ARE1
Description: ARE (antioxidant response element); antioxidant response element of rat glutathione S-transferase Ya subunit, and rat NAD(P)H:quinone reductase genes

Sequence: RGTGACNNNGC
Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Motif_648	ARE2	ARE (antioxidant response element); antioxidant response element of mouse metallothionein-I (MT-I) gene; Consensus sequence of mouse MT-I and MT-II genes, and MT genes isolated from rat, hamster, human, sheep, chicken, Drosophila melanogaster, C. elegans; See ARE1	90.91%
Motif_573	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	74.21%
Motif_211	ABREMOTIFIOSRAB16B	Motif I found in the promoter of rice rab16B gene; Motif I and motif III are both required for ABA responsiveness; However, each can substitute for the other	69.66%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	66.54%
Motif_275	AtbZIP1	The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding	66.34%
Motif_474	ELRENTCHN50	Elicitor-responsive element (ElRE); Found in tobacco basic class I chitinase gene (CHN50)	66.14%
Matrix_418	KNAT6; KNAT2	Not Available	65.58%
Motif_652	AUXRETGA2GMGH3	TGA-box #2 in putative auxin-resonsive element (AUXRE) E1 of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts; Hex-like element; E1 element=-249 to -203; E2 element=-241 to -224	65.12%
Matrix_221	SPL7	Not Available	64.86%
Matrix_188	SPL4	Not Available	63.15%
Matrix_165	KNAT1	Not Available	60.66%
Motif_120	ABRETAEM	ABRE (ABA responsive element) found in wheat Em gene; transacting factor: EMBP-1; EMBP-1 binds to CACGTGGC	60.57%
Motif_74	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	60.57%
Motif_64	ABAREG2	Motif related to ABA regulation; Gene: sunflower helianthinin; transacting factor: bZIP	60.57%
Matrix_137	SPL1; SPL12	Not Available	59.76%
Matrix_141	AT3G25990	Not Available	59.70%
Matrix_58	WRKY55; ATWRKY54; WRKY46; WRKY70; AtWRKY41; WRKY53; WRKY30	Not Available	59.50%
Motif_472	WRKY18	Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis	59.29%
Matrix_282	bZIP60	Not Available	59.03%
Matrix_275	ZAP1	Characterization of a zinc-dependent transcriptional activator from Arabidopsis	58.69%
Matrix_228	TGA2	Not Available	58.42%
Motif_347	OPAQUE2ZMB32	opaque-2 binding site of maize b-32 (type I ribosome-inactivating protein gene); O2; O2S; O2S and GARE form a gibberellin response complex (GARC)	58.38%
Matrix_307	RGL2; RGL3	Not Available	57.94%
Motif_639	WRKY18	Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis	57.24%
Motif_507	ABASEED1	ABA regulation; seed expression; Gene: carrot Dc3; Transacting factor: bZIP; Contains ACGT motif	57.24%
Motif_53	ABREA2HVA1	A2 of ABRC3; ABRC3 (ABA response complex 3) of HVA1 consists of CE3 and A2; ABA responsive element; stress response; Found in barley HVA1 gene encoding a class 3 late embryogenesis-abundant (Lea) protein; ABRC1 OF HVA22 consists of CE1 and A3	57.24%
Motif_413	WRKY11	Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	57.05%
Matrix_82	TCP17	Not Available	56.95%
Matrix_294	MEE35	Not Available	56.88%
Matrix_70	GATA26	Not Available	56.21%
Motif_374	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	56.03%
Motif_680	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	56.03%
Motif_82	ACGTSEED3	ACGT motif related to seed expression; Gene: synthetic; wild-type motif (Iwt) containing G-box-related sequence; transacting factor: bZIP; A tobacco bZip transcription activator (TAF-1) binding site	56.03%
Motif_232	ABADESI1	Responsive to ABA and desiccation; Motif I of rice rab16A-D (initially called rab-21); Expressed in seeds late during embryogenesis; Induced by ABA and osmotic stress in vegetative tissues; Contains ACGT motif; transacting factor: TAF-1	56.03%
Motif_542	ABI5; AtMYC2; HY5	A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth. Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis	56.03%
Motif_132	PIATGAPB	PI found in the Arabidopsis thaliana GAPB gene promoter; Located between -157 and -150; Mutations in the PI resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana	56.03%
Motif_440	TGA1 binding site motif	Hex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG	56.03%
Motif_300	ACGTROOT1; HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. ACGT motif related to root expression; Gene: synthetic; perfect palindromic sequence (PA) containing G-box-related sequence; transacting factor: TAF-1; Binding of SGBF-1 (a Soybean G-box binding bZIP transcription factor) to ABRE is enhanced by SCOF-1 (a zinc finger protein ); Transcription of SCOF-1 is induced by low temperature and ABA	56.03%
Matrix_489	RAV1	Not Available	56.01%
Matrix_281	TCP13	Not Available	55.47%
Motif_332	SV40COREENHAN	SV40 core enhancer; Similar sequences found in rbcS genes	55.37%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	55.23%
Motif_467	VOZ binding site	Not Available	55.00%
Motif_552	MRE1	MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1	54.86%
Matrix_94	TCP5	Not Available	54.72%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	54.61%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	54.27%
Matrix_190	ATERF1	Not Available	53.80%
Motif_429	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	53.52%
Motif_386	WRKY11	Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	53.52%
Matrix_37	GATA27	Not Available	53.47%
Matrix_226	GATA1	Not Available	53.47%
Matrix_3	WRKY48	Not Available	53.44%
Matrix_507	TCP3	Not Available	53.17%
Matrix_463	HAT3.1	Not Available	53.13%
Matrix_238	WRKY59; WRKY23; WRKY68	Not Available	53.10%
Matrix_101	ERF5	Not Available	52.98%
Matrix_80	BIM1	Not Available	52.83%
Matrix_393	REM1	Not Available	52.78%
Matrix_225	MYB52	Not Available	52.76%
Matrix_197	NAP	Not Available	52.70%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	52.69%
Motif_250	ACGTOSGLUB1	ACGT motif found in GluB-1 gene in rice; Required for endosperm-specific expression; Conserved in the 5'-flanking region of glutelin genes; Combination of GCN4, AACA and ACGT motifs was found sufficient to confer a detectable level of endosperm expression	52.50%
Matrix_333	GATA3	Not Available	52.48%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	52.38%
Matrix_500	WRKY43	Not Available	52.35%
Matrix_327	ARR11	Not Available	52.23%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	52.11%
Matrix_259	AT1G50680; AT1G51120	Not Available	52.08%
Matrix_59	AT4G00238; AT4G00250	Not Available	52.08%
Matrix_263	WRKY33; WRKY19; WRKY32	Not Available	52.04%
Matrix_90	BEE1; BEE3; AT3G07340; AT5G48560; AT5G50915	Not Available	52.03%
Matrix_326	AT5G07310; Rap2.6L; AT5G61890	Not Available	51.81%
Matrix_415	WRKY27	Not Available	51.79%
Matrix_171	LBD3; LBD4	Not Available	51.65%
Matrix_75	WRKY29	Not Available	51.54%
Matrix_195	GATA2; GATA4	Not Available	51.52%
Motif_295	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	51.48%
Motif_512	GLMHVCHORD	GLM (GCN4-like motif) found in the promoter of barley B1- and c-hordein gene; Involved in the nitrogen response of c-hordein promoter; SPA, a seed-specific basic leucine zipper protein from wheat, can activate transcription from the GCN4-like motif (GLM) of -326 LMWG-1D1 promoter	51.48%
Motif_200	GBOXLERBCS	G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF	51.48%
Motif_205	WRKY43; WRKY38; WRKY26; WRKY11	Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense;Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	51.48%
Motif_621	bZIP23; bZIP19	Arabidopsis thaliana transcription factors bZIP19 and bZIP23 regulate the adaptation to zinc deficiency	51.48%
Motif_19	AAGACGTAGATACL12	Sequence found in Arabidopsis acyl carrier protein (ACP), Acl1.2, gene promoter; Contains bZIP core motif (ACGT)	51.48%
Motif_234	ABADESI2	Synthetic element (hex-3) related to response to ABA and to desiccation; seed expression; Gene: synthetic; hex-3, mutant of hex-1 sequence from wheat histone H3 promoter; transacting factor: bZIP	51.48%
Motif_337	WRKY11	Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	51.48%
Motif_124	ABREMOTIFIIIOSRAB16B	Motif III found in the promoter of rice rab16B gene; Motif I and motif III are both required for ABA responsiveness; However, each can substitute for the other	51.48%
Motif_338	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	51.48%
Motif_638	ABRE binding site motif	Not Available	51.48%
Motif_252	GBOXPC	G box; Binding site of parsley cytosolic G-box binding factors (cytosolic GBFs); Cytosolic G-Box binding activity is modulated by light; DNA binding activity of cytosolic GBFs is regulated by cytosolic phosphorylation/dephospholylation activities; Cytosolic GBFs are translocated to the nucleus in a light-regulated manner	51.48%
Motif_128	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	51.48%
Motif_345	GT-1	Molecular dissection of GT-1 from Arabidopsis	51.48%
Motif_260	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	51.48%
Motif_378	WRKY6	Targets of AtWRKY6 regulation during plant senescence and pathogen defense	51.48%
Motif_596	WRKY11	Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	51.48%
Motif_430	WRKY11	Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	51.48%
Motif_592	WRKY43; WRKY38; WRKY26	Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense. Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	51.48%
Motif_589	ARECOREZMGAPC4	Putative binding site for a Myb found in the promoter of maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene; Essential for anaerobic induction	51.48%
Motif_468	WRKY43; WRKY38; WRKY26	Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense. Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	51.48%
Motif_62	AtMYB44	Two novel MYB homologues with changed expression in late embryogenesis-defective Arabidopsis mutants	51.48%
Matrix_206	CUC1; ANAC100	Not Available	51.41%
Matrix_339	bHLH104	Not Available	51.40%
Matrix_151	ASIL1	Not Available	51.37%
Matrix_17	WRKY22	Not Available	51.37%
Matrix_405	DREB2C	Not Available	51.37%
Matrix_122	ABF1; AREB2	Not Available	51.34%
Matrix_450	SPL7	Not Available	51.32%
Matrix_350	ARR14	Not Available	51.28%
Matrix_286	GATA7	Not Available	51.26%
Matrix_273	ANAC55	Not Available	50.91%
Matrix_494	OBP4	Not Available	50.84%
Matrix_515	ddf2; ATCBF3; CBF1; CBF4	Not Available	50.83%
Matrix_249	WRKY11	Not Available	50.79%
Matrix_492	ETT	Not Available	50.75%
Matrix_102	WRKY21	Not Available	50.70%
Matrix_370	WRKY50; WRKY51	Not Available	50.70%
Matrix_322	NST3; ANAC015; BRN2	Not Available	50.69%
Matrix_257	NAC050; ANAC051; anac057; NAC2	Not Available	50.63%
Matrix_203	GATA9; GATA12	Not Available	50.57%
Matrix_109	GBF3	Not Available	50.37%
Matrix_230	ARR11	Not Available	50.34%
Matrix_91	CRF3	Not Available	50.29%
Matrix_41	anac058	Not Available	50.23%
Motif_189	CMSRE1IBSPOA	CMSRE-1 (Carbohydrate Metabolite Signal Responsive Element 1) found in the promoter of sweet potato sporamin A gene	50.20%
Motif_334	MYB1; MYB2	An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence. Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen	50.20%
Matrix_355	ERF10; ERF11	Not Available	50.18%
Matrix_84	AtGRF6	Not Available	50.16%
Matrix_505	GATA8	Not Available	50.14%
Matrix_384	ATWRKY17	Not Available	50.12%
Matrix_266	TCP16	Determinants of the DNA binding specificity of class I and class II TCP transcription factors	50.12%
Matrix_143	GATA14; GATA6; GATA5	Not Available	50.08%
Matrix_234	RAP2.3	Not Available	50.03%
Motif_249	DPBF1&2 binding site motif	A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system	50.00%