PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Motif_30
Name: HSELIKENTACIDICPR1
Description: HSE-like motif in -56 region of acidic PR1 gene of tobacco; not found in basic PR1 gene

Sequence: CNNGAANNNTTCNNG
Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Motif_173	HSE	HSE (heat shock response element); consensus sequence found in the promoter regions of heat shock protein genes; HSF binding site; HsfA3, a new member of the Hsf (heat stress transcription factor) family; was isolated by yeast two-hybrid screening, using HsfA1 as a bait; HsfA3 is a single copy gene with all conserved sequence elements characteristic of a heat stress transcription factor	85.17%
Motif_425	ANAC013; ANAC016; ANAC017; ANAC053; ANAC078	A membrane-bound NAC transcription factor is a regulator of mitochondrial retrograde regulation involved in oxidative stress responses in Arabidopsis thaliana	63.90%
Matrix_353	HAT5	Not Available	60.79%
Matrix_466	PRR5	Not Available	60.43%
Matrix_178	HSFB2A	Not Available	60.29%
Motif_115	HSEs binding site motif	Arabidopsis and the heat stress transcription factor world: how many heat stress transcription factors do we need?	58.50%
Matrix_21	HSFC1	Not Available	57.82%
Motif_689	ANAC092	NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in Arabidopsis	56.63%
Matrix_13	HAT5	Not Available	56.56%
Matrix_89	SOC1	Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	55.92%
Motif_494	TOPOISOM	Topoisomerase cleavage site consensus sequence; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)	55.31%
Matrix_498	AT2G28710; AT3G46070; AT3G46080; ZAT7	Not Available	55.21%
Matrix_429	KAN4	Not Available	54.60%
Matrix_70	GATA26	Not Available	54.59%
Matrix_499	ARR18	Not Available	54.35%
Matrix_213	ATHB22	Not Available	54.35%
Matrix_361	AT1G25550	Not Available	54.23%
Motif_482	GARE2	Putative gibberellin responsive element; Consensus sequence of GA inducible alpha-amylase genes from rice, barley and wheat	54.01%
Matrix_421	GLK1	Not Available	53.99%
Matrix_338	AP2	Not Available	53.91%
Matrix_502	AT3G13040	Not Available	53.65%
Matrix_440	LFY	Not Available	53.57%
Matrix_69	AT2G03500	Not Available	53.10%
Matrix_68	AtMYB77	More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana. Plant J 14: 273-84	52.99%
Matrix_47	AtMYB77	Not Available	52.99%
Motif_472	WRKY18	Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis	52.92%
Matrix_324	AT2G01060	Not Available	52.87%
Matrix_412	GL1	Not Available	52.81%
Matrix_97	APRR2	Not Available	52.72%
Motif_134	ANAC092	NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in Arabidopsis	52.63%
Matrix_194	HYH; HY5	Not Available	52.60%
Matrix_264	ATAREB1	Not Available	52.52%
Matrix_491	AT1G68670; AT3G25790	Not Available	52.51%
Matrix_227	AT1G64620	Not Available	52.46%
Matrix_141	AT3G25990	Not Available	52.34%
Matrix_161	MYBC1; AT3G10760; LUX; AT5G05090; AT5G59570	Not Available	52.26%
Matrix_290	AP2	Not Available	52.17%
Matrix_471	KAN4	Not Available	52.15%
Matrix_458	MGP; AT1G14580; AtIDD7; AtIDD5; AtIDD4; AtIDD12; JKD; AT5G66730	Not Available	52.12%
Matrix_74	LFY	Not Available	51.95%
Matrix_333	GATA3	Not Available	51.94%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	51.88%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	51.85%
Motif_83	CIACADIANLELHC	Region necessary for circadian expression of tomato Lhc gene	51.84%
Motif_352	ATHB5 binding site motif	Consensus binding sequence for Arabidopsis class I HDzip (Homeodomein-leucine zipper) protein, ATHB5; ATHB5 protein forms dimers in solution; ATHB5 and ATHB6 exhibit identical DNA binding specificities; ATHB5 forms heterodimers with other class I HDzip proteins; DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro	51.84%
Matrix_226	GATA1	Not Available	51.80%
Matrix_37	GATA27	Not Available	51.58%
Matrix_418	KNAT6; KNAT2	Not Available	51.55%
Matrix_16	AT3G04450; PHL1	Not Available	51.47%
Motif_23	14BPATERD1	14 bp region (from -599 to -566) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis	51.42%
Motif_39	CYTOSITECSHPRA	13 bp sequence of unknown function found in cucumber hydroxypyruvate reductase (hprA) gene promoter; Protein binding site; Required for cytokinin responsiveness; See AS1LIKECSHPRA found in the same region; Also involved in light responsiveness	51.42%
Matrix_181	Dof5.7	Not Available	51.24%
Matrix_162	AtPHR1	Not Available	51.24%
Matrix_404	OBP4	Not Available	51.20%
Matrix_140	ATHB5	DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro	51.17%
Matrix_369	AT2G18300	Not Available	51.11%
Matrix_259	AT1G50680; AT1G51120	Not Available	51.04%
Matrix_195	GATA2; GATA4	Not Available	51.01%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	50.97%
Matrix_149	PI	Not Available	50.89%
Matrix_153	AP2	Not Available	50.84%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	50.69%
Matrix_83	PRR5	Not Available	50.64%
Matrix_246	ARR10	Molecular structure of the GARP family of plant Myb-related DNA binding motifs of the Arabidopsis response regulators	50.62%
Matrix_4	ARR14	Not Available	50.59%
Matrix_210	ARR1	Not Available	50.57%
Matrix_407	AP1	Not Available	50.54%
Matrix_124	AtHB23; ATHB13; ATHB20; ATHB5	Not Available	50.51%
Matrix_443	AGL15	Not Available	50.50%
Matrix_29	AP1	Not Available	50.44%
Matrix_48	PI	Not Available	50.40%
Motif_671	GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	50.34%
Motif_20	HSELIKENTGLN2	HSE-like sequence in 5' upstream region of beta-1,3-glucanase gene (GLN2) of tobacco	50.34%
Motif_87	AGL22; AGL20; AGL24	Regulation of floral patterning by flowering time genes	50.34%
Matrix_184	AGL15	Not Available	50.25%
Matrix_115	AGL15	Not Available	50.11%
Matrix_271	AT3G16350	Not Available	50.05%
Motif_47	CARGNCAT	Noncanonical CArG motif (CC-Wx8-GG) found in the promoter region of DTA1 (AtGA2ox6); A relevant cis element for the response to AGL15 (AGAMOUS-like 15) in vivo	50.05%