PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Motif_288
Name: NONAMERMOTIFTAH3H4
Description: Nonamer motif found in promoter of wheat histone genes H3 and H4

Sequence: CATCCAACG
Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Motif_163	BOXCPSAS1	Box C in pea (P.s.) asparagine synthetase (AS1) gene; Found at -45; AS1 is negatively regulated by light; Box C binds with nuclear proteins, which was competed by a putative repressor element RE1	66.67%
Motif_263	RYREPEATVFLEB4; ABI3	RY repeat motif; quantitative seed expression; Gene: Vicia faba LeB4; Soybean glycinin (Gy2); other dicot and monocot seed protein genes; Sph box found in rice Osem gene promoter; Binding site of Arabidopsis B3-domain-containing transcription factor FUS3; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption; FUS3 protein physically interact with two RY elements present in the AtGA3ox promoter;RY repeats are conserved in the 5 prime-flanking region of legume seed protein genes. Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	66.67%
Motif_687	AtWER	Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis	66.67%
Motif_150	RBCSCONSENSUS	rbcS general consensus sequence; AATCCAA or AATCCAAC	66.67%
Motif_101	MYB61	AtMYB61, an R2R3-MYB transcription factor, functions as a pleiotropic regulator via a small gene network	66.67%
Motif_119	ABI3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	66.67%
Motif_543	TATCCACHVAL21	TATCCAC box is a part of the conserved cis-acting response complex (GARC) that most often contain three sequence motifs, the TAACAAA box, or GA-responsive element (GARE); the pyrimidine box, CCTTTT (see S000259); and the TATCCAC box, which are necessary for a full GA response	66.67%
Motif_274	MYB1 binding site motif	Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein	66.67%
Motif_426	MYB58; MYB63	MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis	66.67%
Matrix_73	DEAR3; RAP2.9; RAP2.10	Not Available	63.60%
Matrix_238	WRKY59; WRKY23; WRKY68	Not Available	63.22%
Matrix_478	AT1G01250	Not Available	62.55%
Motif_22	RYREPEATLEGUMINBOX	RY repeat (CATGCAY) or legumin box found in seed-storage protein genes in legume such as soybean	61.11%
Motif_307	TATCCAYMOTIFOSRAMY3D	TATCCAY motif found in rice RAmy3D alpha-amylase gene promoter; a GATA motif as its antisense sequence; TATCCAY motif and G motif are responsible for sugar repression	61.11%
Motif_666	MYB binding site promoter	A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes	61.11%
Matrix_242	AT2G25820; AT3G16280; AT4G32800; TINY2; tny	Not Available	61.00%
Matrix_400	MYB46	MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes	57.04%
Matrix_486	MYB83	MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes	57.04%
Motif_254	MYB46; MYB83	MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes	57.04%
Motif_404	AACACOREOSGLUB1	Core of AACA motifs found in rice glutelin genes, involved in controlling the endosperm-specific expression; AACA is also closely associated with the GCN4 motif in all rice glutelin genes and together have been shown to confer endosperm-specific enhancement to the truncated -90 CaMV 35S promoter	55.56%
Motif_161	SPL7; SPL4	A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors	55.56%
Motif_459	SORLIP1	Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	55.56%
Motif_168	IBOX	I box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated gene	55.56%
Motif_669	FUS3; ABI3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	55.56%
Motif_188	CDA1ATCAB2	CDA-1 (CAB2 DET1-associated factor 1) binding site in DtRE (dark response element) f of chlorophyll a/b-binding protein2 (CAB2) gene in Arabidopsis	55.56%
Motif_184	PROXBBNNAPA	prox B (proximal portion of B-box) found in napA gene of Brassica napus; CA-rich sequence; Found between -130 and -124; Required for seed specific expression and ABA responsiveness; dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE	55.56%
Motif_361	SORLREP4AT	one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; Common in circadian-regulated promoters; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	55.56%
Motif_456	FUS3; ABI3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	55.56%
Motif_382	CATATGGMSAUR	Sequence found in NDE element in soybean SAUR (Small Auxin-Up RNA) 15A gene promoter; Involved in auxin responsiveness	55.56%
Motif_414	ABI3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	55.56%
Motif_100	DREB2A; DREB1A	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	55.56%
Motif_447	AtMYC2 BS in RD22; PIF4	Binding site for MYC (rd22BP1) in Arabidopsis dehydration-resposive gene, rd22; MYC binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -200 of rd22 gene; Also MYB at ca. -141 of rd22 gene; See also MYBATRD22; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses	55.56%
Motif_420	SORLREP2AT	one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and all SORLIPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	55.56%
Motif_383	UPRE-III(bZIP60)	The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in Arabidopsis	55.56%
Motif_138	RAP2.2	Transcription factor RAP2.2 and its interacting partner SINAT2: stable elements in the carotenogenesis of Arabidopsis leaves	55.56%
Motif_127	SBOXATRBCS	S-box conserved in several rbcS promoters in Arabidopsis; ABI4 binding site; Important for the sugar and ABA responsiveness of CMA5	55.56%
Motif_192	BOXLCOREDCPAL	Consensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitro	55.56%
Motif_649	2SSEEDPROTBANAPA	Conserved in many storage-protein gene promoters; May be important for high activity of the napA promoter	55.56%
Motif_544	CACGCAATGMGH3	Sequence found in D4 element in Soybean GH3 gene promoter; Showed constitutive activity with TGTCTC element; Confers auxin inducibility; Binding site of nuclear protein	55.56%
Motif_278	CELLCYCLESC	cell cycle box found in URS2 (-940/-200) of HO gene of S.cerevisiae; cell-cycle-specific activation of transcription	55.56%
Motif_71	WRKY63	ABO3, a WRKY transcription factor, mediates plant responses to abscisic acid and drought tolerance in Arabidopsis	55.56%
Motif_394	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	55.56%
Motif_293	NONAMERATH4	Nonamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 gene	55.56%
Motif_310	ANAERO3CONSENSUS	One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO3CONSENSUS by the PLACEdb curator	55.56%
Motif_490	PROLAMINBOXOSGLUB1	Prolamine box found in the rice GluB-1 gene promoter; Involved in quantitative regulation of the GluB-1 gene	55.56%
Motif_484	RAV1-B binding site motif	Binding consensus sequence of an Arabidopsis transcription factor, RAV1; RAV1 specifically binds to DNA with bipartite sequence motifs of RAV1-A (CAACA) and RAV1-B (CACCTG); RAV1 protein contain AP2-like and B3-like domains; The AP2-like and B3-like domains recognize the CAACA and CACCTG motifs, respectively; The expression level of RAV1 were relatively high in rosette leaves and roots; RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	55.56%
Motif_265	GCAACREPEATZMZEIN	GCAAC repeat found in the 22bp recognition site for beta-1 factor in the promoter of beta-zein (prolamin type) gene of maize; GCAAC is the core recognition sequence of the protein encoded by the retroviral oncogene myb	55.56%
Motif_436	WRKY18	Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis	55.56%
Motif_222	AGMOTIFNTMYB2	AG-motif found at -114 of the promoter of NtMyb2 gene; NtMyb2 is a regulator of the tobacco retrotransposon Tto1 and the defence-related gene phenylalanine ammonia lyase (PAL), which are induced by various stress such as wounding or elicitor treatment; AGP1 (GATA-type zinc finger protein) binding site	55.56%
Motif_640	RYREPEATBNNAPA	RY repeat found in RY/G box (the complex containing the two RY repeats and the G-box) of napA gene in Brassica napus; Found between -78 and -50; Required for seed specific expression;dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE	55.56%
Motif_643	DRE2COREZMRAB17	DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABA	55.56%
Motif_231	EIN3	Ethylene signaling in Arabidopsis involves feedback regulation via the elaborate control of EBF2 expression by EIN3	55.56%
Motif_590	MYB3 binding site motif	Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses	55.56%
Motif_577	GRAZMRAB28	GRA; GC-rich rab activator; Found in the promoter of ABA responsive rab28 gene from maize; Similar (seven of 12 bases) to the GRA element from the maize rab17 promoter (GRAZMRAB17); Found at -138 to -130	55.56%
Motif_391	REALPHALGLHCB21	REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulation	55.56%
Motif_511	RYREPEATGMGY2	RY repeat motif (CATGCAT); Present in the 5' region of the soybean glycinin gene (Gy2)	55.56%
Motif_628	TATCCAOSAMY	TATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2	55.56%
Motif_15	AMYBOX2	amylase box; amylase element; Conserved sequence found in 5'upstream region of alpha-amylase gene of rice, wheat, barley	55.56%
Motif_54	LTREATLTI78	Putative low temperature responsive element (LTRE); Found in Arabidopsis thaliana low-temperature-induced (lti) genes, lti78 and lti65; Repeated four times in lti78 which is also known as cor78 and rd29A; Found also in barley low temperature responsive genes, blt4.2, blt4.6, blt4.9 (lipid transfer genes); cold inducible; See LTRECORE; Also present in rab18, kin1, and kin2; Differential expression of two related, low-temperature-induced genes in Arabidopsis thaliana	55.56%
Motif_371	DRE-like promoter motif	The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses	53.45%
Matrix_388	SNZ; SMZ; TOE2	Not Available	53.18%
Motif_419	MYB4 binding site motif	Not Available	52.98%
Matrix_452	MYB46	Not Available	52.20%
Matrix_237	MYB55	Not Available	50.94%
Matrix_368	ATWRKY56; WRKY45; WRKY75; WRKY24	Not Available	50.85%
Matrix_321	HRD	Not Available	50.32%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	50.25%
Motif_375	ERELEE4	ERE (ethylene responsive element) of tomato E4 and carnation GST1 genes; GST1 is related to senescence; Found in the 5'-LTR region of TLC1.1 retrotransposon family in Lycopersicon chilense; ERE motifs mediate ethylene-induced activation of the U3 promoter region	50.00%
Motif_454	DRECRTCOREAT	Core motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)	50.00%
Motif_452	MYB4 binding site motif	Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses	50.00%
Motif_317	GAREAT	GARE (GA-responsive element); Occurrence of GARE in GA-inducible, GA-responsible, and GA-nonresponsive genes found in Arabidopsis seed germination was 20, 18, and 12%, respectively	50.00%
Motif_181	IBOXCORENT	I-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regions	50.00%
Motif_169	ATHB2 binding site motif	Recognition sequence of Arabidopsis Athb-2 protein; Athb-2 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	50.00%
Motif_292	MYBPZM	Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes	50.00%