Matrix_222 | AGL2 | DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation | | 85.37% |
Matrix_28 | SEP1 | Not Available | | 85.37% |
Matrix_310 | AGL3 | The Arabidopsis MADS-box gene AGL3 is widely expressed and encodes a sequence-specific DNA-binding protein | | 84.20% |
Matrix_2 | SEP4 | Not Available | | 84.20% |
Matrix_417 | SEP4 | Not Available | | 84.20% |
Matrix_428 | SEP4 | Not Available | | 83.54% |
Motif_6 | AGL1 binding site motif | Binding consensus sequence of Arabidopsis AGL1 (AGAMOUS-like 1); AGL1 contains MADS domain; AGL20 is a MADS domain gene from Arabidopsis that is activated in shoot apical meristem during the transition to flowering; AGL20 is also regulated by the Gibberellin pathway; Complex regulatory net works involving several MADS-genes underlie development of vegetative structures | | 79.00% |
Matrix_121 | SHP1 | Not Available | | 77.31% |
Matrix_386 | AGL1 | DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation | | 77.31% |
Motif_105 | AGL3 binding site motif | The Arabidopsis MADS-box gene AGL3 is widely expressed and encodes a sequence-specific DNA-binding protein | | 76.53% |
Matrix_43 | AG | Not Available | | 74.43% |
Matrix_445 | AG | Not Available | | 74.43% |
Matrix_98 | AG | Isolation and characterization of the binding sequences for the product of the Arabidopsis floral homeotic gene AGAMOUS | | 74.43% |
Matrix_358 | AGL15 | Binding site selection for the plant MADS domain protein AGL15: an in vitro and in vivo study | | 69.86% |
Motif_327 | AGAMOUSATCONSENSUS | Binding consensus sequence of Arabidopsis AGAMOUS MADS domain; MCM1 binding-sites in a-mating-type-specific promoters of Saccharomyces cerevisiae show similarities with the binding-site sequence of the AGAMOUS MADS domain; MADS domain and I region of AGAMOUS are sufficient and necessary for DNA binding; Both the K domain and C region are indispensable for AG function in flower development; See S000338 | | 68.87% |
Motif_110 | AGATCONSENSUS | Binding consensus sequence for the product of the Arabidopsis floral homeotic gene AGAMOUS (AG); AG protein contains a region similar to the DNA binding domain of SRF and MCM1; The consensus sequence contains a CArG box; AG protein is a putative transcription factor for floral genes; MADS domain and I region of AGAMOUS are sufficient and necessary for DNA binding; Both the K domain and C region are indispensable for AG function in flower development | | 65.61% |
Motif_148 | CArG3 motif in AP3 | CArG3 found in the Arabidopsis APETALA3 (AP3) gene promoter; Binding site of AP3/PI heterodimer; Binding site for a negatively acting factors; Binding sequence of Arabidopsis MADS domain homeotic proteins APETALA1, APETALA3, PISTILLATA, and AGAMOUS; AP1, AG, and AP3-PI complexes induce similar conformational changes on a CArG-box sequence; The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects | | 64.17% |
Matrix_485 | SVP; AGL24 | Not Available | | 63.42% |
Motif_289 | LFY | Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins | | 62.52% |
Motif_527 | LFY | Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins | | 62.52% |
Matrix_18 | AP3 | Not Available | | 61.69% |
Matrix_464 | AGL15; AGL71 | Not Available | | 61.42% |
Motif_455 | AG binding site motif | Nucleotide sequences recognized by the AGAMOUS MADS domain of Arabidopsis thaliana in vitro | | 61.02% |
Matrix_123 | FUSCA3 | Not Available | | 60.74% |
Matrix_267 | FLM; FLC; MAF2; FCL3; AGL69; AGL68 | Not Available | | 59.36% |
Motif_686 | LFY | Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins | | 59.12% |
Motif_159 | LFY | Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins | | 59.12% |
Motif_111 | CArG1 motif in AP3 | CArG1 found in the Arabidopsis APETALA3 (AP3) gene promoter; Binding site of AP3/PI heterodimer; Binding site of AP3/PI heterodimer; Binding site for a positively acting factors; MADS domain transcription factors bind with a consensus sequence called the CArG box; The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects | | 58.61% |
Motif_504 | LFY | Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins | | 58.19% |
Motif_635 | LFY | Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins | | 58.19% |
Matrix_338 | AP2 | Not Available | | 57.28% |
Matrix_149 | PI | Not Available | | 56.66% |
Matrix_194 | HYH; HY5 | Not Available | | 56.29% |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | | 56.10% |
Matrix_345 | POC1 | Not Available | | 56.10% |
Matrix_359 | FLC | Not Available | | 55.87% |
Matrix_214 | AP1 | Not Available | | 55.79% |
Matrix_213 | ATHB22 | Not Available | | 55.47% |
Matrix_304 | AtSPL3 | Functional dissection of the plant-specific SBP-domain: overlap of the DNA-binding and nuclear localization domains | | 55.47% |
Matrix_466 | PRR5 | Not Available | | 54.76% |
Matrix_414 | AGL15 | Not Available | | 54.52% |
Matrix_403 | BZR1 | Not Available | | 54.06% |
Matrix_107 | AtSPL3 | Not Available | | 53.19% |
Matrix_443 | AGL15 | Not Available | | 53.01% |
Motif_449 | AGL25; SVP | FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis. Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis | | 52.78% |
Motif_45 | AGL25; SOC1 | FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis;Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis | | 52.78% |
Matrix_153 | AP2 | Not Available | | 52.39% |
Matrix_39 | AP1 | Not Available | | 52.34% |
Matrix_468 | ATHB9 | The Arabidopsis Athb-8, -9 and -14 genes are members of a small gene family coding for highly related HD-ZIP proteins | | 52.34% |
Matrix_381 | ATHB9 | Not Available | | 52.34% |
Matrix_459 | ATHB9; CNA; PHB; ATHB-8; REV | Not Available | | 52.34% |
Motif_47 | CARGNCAT | Noncanonical CArG motif (CC-Wx8-GG) found in the promoter region of DTA1 (AtGA2ox6); A relevant cis element for the response to AGL15 (AGAMOUS-like 15) in vivo | | 52.15% |
Motif_44 | AGL25 | FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis | | 52.15% |
Matrix_375 | AtSPL8 | Not Available | | 52.09% |
Matrix_55 | PIF3 | Not Available | | 52.01% |
Motif_387 | AG BS in SPL/NOZ | The homeotic protein AGAMOUS controls microsporogenesis by regulation of SPOROCYTELESS | | 51.77% |
Motif_75 | TEFBOXATEEF1AA1 | tef-box found in the Arabidopsis eEF1AA1 gene promoter; An activating sequence associated with telo-box; Required for the gene expression in root primordia; Acts co-operatively with telo-box; Plant interstitial telomere mitifs participate in the control of gene expression in root meristems | | 51.65% |
Matrix_356 | PRR5 | Not Available | | 51.57% |
Matrix_305 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | | 51.42% |
Matrix_251 | PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling | | 51.18% |
Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | | 51.08% |
Matrix_498 | AT2G28710; AT3G46070; AT3G46080; ZAT7 | Not Available | | 51.06% |
Matrix_353 | HAT5 | Not Available | | 51.04% |
Motif_185 | CArG2 motif in AP3 | CArG2 found in the Arabidopsis APETALA3 (AP3) gene promoter; Mutations in CArG2 result in a decrease in the expression in petals, but the expression pattern in stamens is unchanged; The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects | | 51.02% |
Matrix_191 | PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling | | 50.96% |
Matrix_19 | PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling | | 50.43% |
Matrix_83 | PRR5 | Not Available | | 50.42% |
Matrix_140 | ATHB5 | DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro | | 50.19% |
Matrix_467 | RAV1 | Not Available | | 50.12% |
Matrix_34 | RAV1_2 | RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants | | 50.12% |
Matrix_477 | RAV1 | Not Available | | 50.12% |
Matrix_257 | NAC050; ANAC051; anac057; NAC2 | Not Available | | 50.07% |