PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Motif_131
Name: P1BS
Description: PHR1-binding sequence found in the upstream regions of phosphate starvation responsive genes from several plant species; phr1 (phosphate starvation response 1) gene codes for PHR1 protein related to PSR1 gene in C. reinhardtii

Sequence: GNATATNC
Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Motif_503	EECCRCAH1	EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1	72.19%
Motif_489	SORLREP3AT	one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and also all SORLIPs;Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	59.69%
Motif_91	SORLIP4AT	one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	59.69%
Motif_382	CATATGGMSAUR	Sequence found in NDE element in soybean SAUR (Small Auxin-Up RNA) 15A gene promoter; Involved in auxin responsiveness	59.69%
Motif_195	TATABOX4	TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation	59.69%
Motif_174	SREATMSD	sugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in Arabidopsis	59.69%
Matrix_90	BEE1; BEE3; AT3G07340; AT5G48560; AT5G50915	Not Available	59.58%
Matrix_425	TIFY2A	Not Available	59.20%
Matrix_157	LHY; RVE2	Not Available	57.37%
Motif_181	IBOXCORENT	I-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regions	56.52%
Matrix_437	MYC2	Not Available	55.98%
Matrix_429	KAN4	Not Available	55.25%
Motif_324	MYBST1	Core motif of MybSt1 (a potato MYB homolog) binding site; MybSt1 cDNA clone was isolated by using CaMV 35S promoter domain A as a probe; The Myb motif of the MybSt1 protein is distinct from the plant Myb DNA binding domain described so far	54.85%
Motif_193	GLK1	GLK transcription factors coordinate expression of the photosynthetic apparatus in Arabidopsis	54.85%
Motif_242	IBOXCORE	I box; I-box; Conserved sequence upstream of light-regulated genes; Conserved sequence upstream of light-regulated genes of both monocots and dicots	54.85%
Motif_168	IBOX	I box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated gene	54.85%
Motif_502	MYB98	The MYB98 subcircuit of the synergid gene regulatory network includes genes directly and indirectly regulated by MYB98	54.85%
Motif_70	CANBNNAPA	Core of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressor	54.85%
Motif_108	ROOTMOTIFTAPOX1	Motif found both in promoters of rolD	54.85%
Matrix_471	KAN4	Not Available	54.61%
Matrix_114	EPR1; AT3G10113	Not Available	53.92%
Matrix_276	AT1G01520; AT3G09600; AT4G01280; LCL1; AT5G52660	Not Available	53.68%
Matrix_218	TIFY2B; TIFY1	Not Available	53.57%
Matrix_63	ARR10	Not Available	53.56%
Matrix_103	ATHB1	The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	53.30%
Matrix_248	ZFP5	Not Available	52.73%
Matrix_233	MYC3	Not Available	52.44%
Motif_309	GATA promoter motif	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	52.10%
Matrix_62	HAT5	Not Available	52.10%
Matrix_302	HAT1; HAT2	Not Available	51.97%
Matrix_336	AT5G08520	Not Available	51.92%
Matrix_100	AT1G48610	Not Available	51.92%
Matrix_320	MYC4	Not Available	51.40%
Matrix_78	AT3G45610	Not Available	51.30%
Matrix_8	KAN1	Not Available	51.06%
Matrix_441	ATHB5	Not Available	50.32%
Motif_230	GATABOX	GATA box; GATA motif in CaMV 35S promoter; Binding with ASF-2; Three GATA box repeats were found in the promoter of Petunia chlorophyll a/b binding protein, Cab22 gene; Required for high level, light regulated, and tissue specific expression; Conserved in the promoter of all LHCII type I Cab genes	50.00%
Motif_655	CURECORECR	GTAC is the core of a CuRE (copper-response element) found in Cyc6 and Cpx1 genes in Chlamydomonas; Also involved in oxygen-response of these genes	50.00%
Motif_33	ACGTCBOX	C-box according to the nomenclature of ACGT elements; One of ACGT elements; Factors groups 1, 2 and 3 have affinity for C-box;RITA-1 binding site	50.00%
Motif_369	SURECOREATSULTR11	Core of sulfur-responsive element (SURE) found in the promoter of SULTR1;1 high-affinity sulfate transporter gene in Arabidopsis; SURE contains auxin response factor (ARF) binding sequence (GAGACA)(see S000270 ARF:TGTCTC; its complementary seq is GAGACA), and this core sequence is a part of it; this core seq is involved in -S response; Beware of other SURE (sucrose responsive element)	50.00%